esunAI commited on
Commit
9e60293
·
verified ·
1 Parent(s): 14fb437

Add latex_tables.tex

Browse files
Files changed (1) hide show
  1. paper/latex_tables.tex +248 -0
paper/latex_tables.tex ADDED
@@ -0,0 +1,248 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ % AMP Sequences Generated by ProtFlow with Different CFG Settings
2
+ % Generated on 2025-08-21
3
+
4
+ \documentclass{article}
5
+ \usepackage{booktabs}
6
+ \usepackage{longtable}
7
+ \usepackage{array}
8
+ \usepackage{geometry}
9
+ \geometry{margin=1in}
10
+
11
+ \begin{document}
12
+
13
+ \section{Generated AMP Sequences with MIC Values}
14
+
15
+ \subsection{No CFG (0.0) Setting}
16
+
17
+ \begin{table}[h!]
18
+ \centering
19
+ \caption{All generated AMP sequences for No CFG (0.0) setting with corresponding MIC values.}
20
+ \label{tab:amp_sequences_no_cfg_00}
21
+ \begin{tabular}{|c|c|c|}
22
+ \hline
23
+ \textbf{Rank} & \textbf{Sequence} & \textbf{MIC (μg/mL)} \\
24
+ \hline
25
+ 1 & \texttt{KQTSDKIWQIWIMMHGLDRPPIQGSLDNDQHWFNGHTVTENLDDKELDFH} & 239.4 \\
26
+ \hline
27
+ 2 & \texttt{GNCSCAHRRATYLQDDHKHTREYCGRNESRKPAGPGCCHDTCWRTLQQKN} & 244.5 \\
28
+ \hline
29
+ 3 & \texttt{ENEFIRHGCMTDYKSNAILNGQNNVTNQIEWWMLREGSQERKEVFQAGPC} & 247.0 \\
30
+ \hline
31
+ 4 & \texttt{GKGEHRYQEIKSDELNTEESNQKCLDKNFNKTYEKGGMMQFDEQANIPSF} & 247.1 \\
32
+ \hline
33
+ 5 & \texttt{GARKDMGWDISPSLHAKWRHSVEDQNMYCTENIPMELNPNCFHVGEVAWI} & 259.2 \\
34
+ \hline
35
+ 6 & \texttt{ETVHQVSRSRREQGEKFPEPKYWGGVCHTGNMQPRSIYFGEQHLGRRKNW} & 260.4 \\
36
+ \hline
37
+ 7 & \texttt{DRSASNHGPRACAQWPCQSRPNGNLHTWCWWYTWSRTTRLYKNMNCEWGS} & 261.3 \\
38
+ \hline
39
+ 8 & \texttt{PRFWVPQMGLRWDNECKEQYGGHSMGKMHFHKIHDEFSIRPPNDALAFGP} & 265.5 \\
40
+ \hline
41
+ 9 & \texttt{TMHDPNRYISENQTNTYNNIPGIDYQYQPWWRMWKDKANPLMPGLTHHTN} & 270.6 \\
42
+ \hline
43
+ 10 & \texttt{ACWSNTSQSACQSIQQNTDHTWFNAYPHSTTRGMYPGMSAGYAQSLCDVE} & 270.9 \\
44
+ \hline
45
+ 11 & \texttt{WMCISPVTQKEESKKPIYTCYVTDSQKMCGGKDSPGSFQFNWRRIGDHPF} & 271.8 \\
46
+ \hline
47
+ 12 & \texttt{HCQQCFSHMDFWEMRSMAITALIAWFGSWFEQRVIFPKMSPDFSHRWDMH} & 272.2 \\
48
+ \hline
49
+ 13 & \texttt{WNCMRYRKPAYATSQPPRMGTLNLCRFSDHNDDVWIHQNISYQCVFECPH} & 272.6 \\
50
+ \hline
51
+ 14 & \texttt{VYHACETAHHNIWGSEHNNGPKTSTPASTWCYWHKLMDVINEPMKMVPFA} & 275.8 \\
52
+ \hline
53
+ 15 & \texttt{AGCRVKAPCHWEPVYSACDAIMMESWHQPCMQVSPCRRYKCMCMIGAPAN} & 276.6 \\
54
+ \hline
55
+ 16 & \texttt{LAVQAHNIHATDFDHTLYQDHFLTLMGTSVISSEEGWDLVGKEIKYGIPK} & 277.7 \\
56
+ \hline
57
+ 17 & \texttt{VCMTVVIAHRMDLSYDYPCWGERRQYGGMTGEHHSAPQWQLWFAPHGPIM} & 278.9 \\
58
+ \hline
59
+ 18 & \texttt{WSFTCSDNDNSLHDLNPYMHLLDSKDDQGKWGVFQHPTCSLRMTCQLNWH} & 279.8 \\
60
+ \hline
61
+ 19 & \texttt{EPDGCTTWPWAIRWRVMIIQCHEPRTHSEYPLSGMPGDFYKEPPMQNPPC} & 280.8 \\
62
+ \hline
63
+ 20 & \texttt{SEEHPPTNMDMVQNVAGCALTIGYAAHISRAEAPKWLHSLLLLVDCWFGP} & 281.5 \\
64
+ \hline
65
+ \end{tabular}
66
+ \end{table}
67
+
68
+ \subsection{Weak CFG (3.0) Setting}
69
+
70
+ \begin{table}[h!]
71
+ \centering
72
+ \caption{All generated AMP sequences for Weak CFG (3.0) setting with corresponding MIC values.}
73
+ \label{tab:amp_sequences_weak_cfg_30}
74
+ \begin{tabular}{|c|c|c|}
75
+ \hline
76
+ \textbf{Rank} & \textbf{Sequence} & \textbf{MIC (μg/mL)} \\
77
+ \hline
78
+ 1 & \texttt{PSKMPMGYWLHHKYNVCALNPPKHHNNNLKTLMKHSHAHPQPRECNWSWS} & 230.8 \\
79
+ \hline
80
+ 2 & \texttt{SGWRTNDAKCMQWEELYRGRDAPMYKAFTADKRAWVLWWEYHMSHYIVTK} & 232.2 \\
81
+ \hline
82
+ 3 & \texttt{NCPICFKPGHYLALPTPFEGLPFQTTTSWAFWGHLRYICYKHSHVFTRPK} & 249.9 \\
83
+ \hline
84
+ 4 & \texttt{GFEGLKYRPKIQTGQNTRSTAIMFPQCGYPMCKNGEVKAYSEDWNSPGDE} & 253.7 \\
85
+ \hline
86
+ 5 & \texttt{RVYALKILGNDDIALYSNELPSGNLFLWSVATEDCKRYMIMIPADMNEEC} & 258.7 \\
87
+ \hline
88
+ 6 & \texttt{NEEGPCPHNMTNYETGGMCFLAQRVPPKPQKSQWKPSPHEIIMAYWMFSW} & 264.7 \\
89
+ \hline
90
+ 7 & \texttt{GRNRDQSIETHMPAQENDNYGSYKWTKSTCIMGHTFTIYQPMGWTKCCIM} & 266.5 \\
91
+ \hline
92
+ 8 & \texttt{WARKPAYSGMGWANGRDNLFPMDPETLTCEKNSRVQIATYHAEPPSQTPW} & 270.0 \\
93
+ \hline
94
+ 9 & \texttt{ANGEAPIPGFICEIGVFCRTQMCLEHPQCPQIASSSTHKLCQAKKFARWI} & 272.0 \\
95
+ \hline
96
+ 10 & \texttt{TSFRSWWHHQPYFFQCPDGPPGGPVKFNDFRRCKEHRWPRGPWCPALPAE} & 273.2 \\
97
+ \hline
98
+ 11 & \texttt{PGCDADWCNNPKHQVAWFFWRGWWGHLVKPQIYWSGYNPNECLFVQNTEF} & 273.3 \\
99
+ \hline
100
+ 12 & \texttt{YPSRSMTPRNPAYTMHNDCDANHCPQFPWSNLEQTGPVWNHMRPPLEPYI} & 273.9 \\
101
+ \hline
102
+ 13 & \texttt{ETVLSMRQENRQLDFTDSERDWVMHAWLQTATDYFLVPQCCHHHGAWMAI} & 274.6 \\
103
+ \hline
104
+ 14 & \texttt{IETHIWWLQNDSHPCYILVILNPTKKWEYLWPDGWIFKSHCINQADHISF} & 275.8 \\
105
+ \hline
106
+ 15 & \texttt{KVGHQHDLCGKAASNLFMMAFWNIEMKQYHDALSFKNAPIGSNWWCSGRH} & 275.8 \\
107
+ \hline
108
+ 16 & \texttt{WEQCAMSLLSAVFFGMFGDMNIQSGNRIYRCIYPQHYQIPHHEHHWCSYT} & 275.9 \\
109
+ \hline
110
+ 17 & \texttt{GDDIIAGMPEGESRPWAIHYVYVDPNRYAHWGWHSNHRAKAKMTPGLAST} & 276.4 \\
111
+ \hline
112
+ 18 & \texttt{HPYGAHCDVNCAHGNAWCHDFHGDHNMNGEQRREMNTLDEFWSTLMCMSA} & 278.4 \\
113
+ \hline
114
+ 19 & \texttt{SHCTIIPQYIAPGVLGKDEMCEISYGYELPFPYVNCPHRDGHVANYPGKH} & 278.4 \\
115
+ \hline
116
+ 20 & \texttt{PMTHGDQGKTDNTPHSPVTKNMEEVNPACHEQPIPGRLQTSVFLLTNNRK} & 279.1 \\
117
+ \hline
118
+ \end{tabular}
119
+ \end{table}
120
+
121
+ \subsection{Strong CFG (7.5) Setting}
122
+
123
+ \begin{table}[h!]
124
+ \centering
125
+ \caption{All generated AMP sequences for Strong CFG (7.5) setting with corresponding MIC values.}
126
+ \label{tab:amp_sequences_strong_cfg_75}
127
+ \begin{tabular}{|c|c|c|}
128
+ \hline
129
+ \textbf{Rank} & \textbf{Sequence} & \textbf{MIC (μg/mL)} \\
130
+ \hline
131
+ 1 & \texttt{QWHCCRKQGIVAHNSKFPSKKPVIWHRGEASLERNHKGWDPCNCGPRARP} & 175.4 \\
132
+ \hline
133
+ 2 & \texttt{CRCLQQMFHWSNVKSFAKDQEVMPTELQPYKWWRGRYMPIENSIKMELAY} & 200.8 \\
134
+ \hline
135
+ 3 & \texttt{HWVRLHTEIGVHMGCFLCKWRKCQDIGEKHKDQKEYQVMWMKPQHGACLP} & 243.0 \\
136
+ \hline
137
+ 4 & \texttt{QWLTHVRYITYLLCLYNEICSVLRVYPTSTHLFWRNNREARNTWQWPFFT} & 250.4 \\
138
+ \hline
139
+ 5 & \texttt{TAHNWMFPHLNQQHRKIMRFQWSTDNIGCCGGPSDCNWHQTPDKEPRSRD} & 252.5 \\
140
+ \hline
141
+ 6 & \texttt{STRAIDAAKLMSKLQVTSWNSPHWSHQIGCQIGRYRRGEHCEWDEYWDRC} & 256.3 \\
142
+ \hline
143
+ 7 & \texttt{KLAFPWYEVIPDKASEGANRPPIRDKFYDSPTGPYKQDCPDWPGLMLRWT} & 260.8 \\
144
+ \hline
145
+ 8 & \texttt{QTSSMPNSCTSWHGIKALKYQHAEKSRPPGPNMGLNNRHFTFMHNYKPHY} & 261.2 \\
146
+ \hline
147
+ 9 & \texttt{LHFTHHLDSCRMQWEYLRGNLPRNHIGIPMMGKLLNVAGVEHGGLSQCRY} & 263.5 \\
148
+ \hline
149
+ 10 & \texttt{RTKPTIHCSPIYHSMQGYTNSARPAYWNDNCPMWGILWKDNPSWVERKQH} & 266.8 \\
150
+ \hline
151
+ 11 & \texttt{CETHNMYNWRNLQIESMPCQIKMSRTDSNQGAYEWCSAQGFKGKWICWSW} & 268.0 \\
152
+ \hline
153
+ 12 & \texttt{HHGGARLQDDWGSDRFNEMNIHQHETALCWHTDPMPIKARECWERSQCGC} & 268.4 \\
154
+ \hline
155
+ 13 & \texttt{HNTCSPHLWTGHNKNTPYWEWCGPHCCGTQFNMGGKHQLWGTMQPVMHHN} & 271.8 \\
156
+ \hline
157
+ 14 & \texttt{ATEDSWMENCHDTASQQDINEDQFLHYCWDHIEPSDPITNEWACWKKYEW} & 273.6 \\
158
+ \hline
159
+ 15 & \texttt{MITIGTQRPTYNAIIDTQDHHYRNMPTRRVAHCEETVFWPNRTPKWKQKD} & 275.4 \\
160
+ \hline
161
+ 16 & \texttt{QGMPVGSIQNKHDCEYSYPNYTTYWTHPQQWNSMSRLHGSQGGNDNWLHN} & 275.5 \\
162
+ \hline
163
+ 17 & \texttt{KHKTSGMWELRIFIMAGQTAHDCWTCMGMMNNAEQNAPFTWNQCNQGFNN} & 276.5 \\
164
+ \hline
165
+ 18 & \texttt{CWSSCCWATYPFPAEWVWPQCCTGAARVMFHIHFKETFAMNPWGHCEGAP} & 280.2 \\
166
+ \hline
167
+ 19 & \texttt{TLMFQASLVMYNRKGMFSNKRDGGCNPSWEPSLHNQFPCCVNSKADSGDH} & 280.7 \\
168
+ \hline
169
+ 20 & \texttt{GGNAPMESENANWKPRDFMEYTADDGIASGNFQAKELKTSSKLDDTYNCT} & 282.5 \\
170
+ \hline
171
+ \end{tabular}
172
+ \end{table}
173
+
174
+ \subsection{Very Strong CFG (15.0) Setting}
175
+
176
+ \begin{table}[h!]
177
+ \centering
178
+ \caption{All generated AMP sequences for Very Strong CFG (15.0) setting with corresponding MIC values.}
179
+ \label{tab:amp_sequences_very_strong_cfg_150}
180
+ \begin{tabular}{|c|c|c|}
181
+ \hline
182
+ \textbf{Rank} & \textbf{Sequence} & \textbf{MIC (μg/mL)} \\
183
+ \hline
184
+ 1 & \texttt{KGLVRIYGSPQTMTECARCTDRCRMHTKSKSRTLSVVIGFYMHPKWKQAY} & 238.7 \\
185
+ \hline
186
+ 2 & \texttt{LRTTRHIEKIWINGNGDAACKDMALHWMKQSECKPEYCMSLPLTRAGMYT} & 241.9 \\
187
+ \hline
188
+ 3 & \texttt{RWFPNTFPAYMQRQKRAQDFRYPGQGGQVIRSTDDHYWCITYRFWIKKEH} & 243.0 \\
189
+ \hline
190
+ 4 & \texttt{NNLKINCGAINCWNPNPAMHRQPGVCTHKIGKMGSIGMCNMAKSHSMYDE} & 252.4 \\
191
+ \hline
192
+ 5 & \texttt{NTSLKATYRWIRCTLECSETFLEGYIEHQLVNHYIECIAQQSEMKKRPYV} & 254.6 \\
193
+ \hline
194
+ 6 & \texttt{LQEWEHVTYDHLSPRTAGTCKGASCQIKCNEFWQTGNNMSQKWGKASRGI} & 256.3 \\
195
+ \hline
196
+ 7 & \texttt{PIWMLRYIVQHASPGQLATHYMAKRGSRTPRSDMHPNEHIHQNFEAHTIW} & 257.7 \\
197
+ \hline
198
+ 8 & \texttt{RNPGVLRWEWQTGNGLMNNESLSLPSPEDTTMMPHVLLVTSTHTGDKEFH} & 263.1 \\
199
+ \hline
200
+ 9 & \texttt{CWYTMGTHKCPAAPLCGSGLYIELTDWWNVLMMAHMPPVFYQMEIPHNLN} & 268.6 \\
201
+ \hline
202
+ 10 & \texttt{AGMQWHNSTPDTYRCPHAWNFDQAKENWHWHVPTVSWRLMLGHGQPFSWW} & 269.4 \\
203
+ \hline
204
+ 11 & \texttt{YEEMMQKGSNDSKCNAFCKWHEQNTNWYPGFCFTWDWWICYYLPEWTQYH} & 270.8 \\
205
+ \hline
206
+ 12 & \texttt{FPVWLLRPWELLGGPAWEQNCFQANPVPSQKQGCWLWDKDLIPAVQDLLP} & 271.4 \\
207
+ \hline
208
+ 13 & \texttt{RAYNMYHSSFDFGKPKSMWVHYPPGCWSTDLFVAAGCSEEGGVRYFNWLI} & 275.9 \\
209
+ \hline
210
+ 14 & \texttt{LVLYPPNMKGCFMWFAPRNSNCNTEITNGFTHNNQTNQFGPVHFPTNNFF} & 276.6 \\
211
+ \hline
212
+ 15 & \texttt{VPQPLNSGARYAKFYQVGQRCDPTRGVPYTGLPFTCQPYEFCSQGCYIWI} & 277.8 \\
213
+ \hline
214
+ 16 & \texttt{THMTCPAQHENWWRKVTGSGTEGGMYGVGHSAALNYGQDPGCHSWERWRQ} & 278.9 \\
215
+ \hline
216
+ 17 & \texttt{WESPFLYPQVEGGAPSHLETTMDQNGVKGAKDWKPHVWDLWGHDGSACQS} & 279.7 \\
217
+ \hline
218
+ 18 & \texttt{SHWWTWGYQGKHWQYDLMEPQGHTNGLWRCNFNSPSARDTEDGICAGRNH} & 280.9 \\
219
+ \hline
220
+ 19 & \texttt{SNNPNMMVHQTASSNAVQTPDQYLQWMDDRPEFRSEGTVHALIPWISAMW} & 282.1 \\
221
+ \hline
222
+ 20 & \texttt{FTDECARHGLVPSMSACWHILCVPGSQSNTNEAENPHPPNWLDTNQHGHM} & 282.3 \\
223
+ \hline
224
+ \end{tabular}
225
+ \end{table}
226
+
227
+ \section{Summary Statistics}
228
+
229
+ \begin{table}[h!]
230
+ \centering
231
+ \caption{Summary statistics of MIC values across different CFG settings.}
232
+ \label{tab:mic_statistics}
233
+ \begin{tabular}{|c|c|c|c|c|c|}
234
+ \hline
235
+ \textbf{CFG Setting} & \textbf{N} & \textbf{Mean MIC} & \textbf{Min MIC} & \textbf{Max MIC} & \textbf{Std MIC} \\
236
+ \hline
237
+ Strong CFG 7.5 & 20 & 259.2 & 175.4 & 282.5 & 26.2 \\
238
+ \hline
239
+ Weak CFG 3.0 & 20 & 266.7 & 230.8 & 279.1 & 14.2 \\
240
+ \hline
241
+ Very Strong CFG 15.0 & 20 & 266.1 & 238.7 & 282.3 & 13.9 \\
242
+ \hline
243
+ No CFG 0.0 & 20 & 266.7 & 239.4 & 281.5 & 12.8 \\
244
+ \hline
245
+ \end{tabular}
246
+ \end{table}
247
+
248
+ \end{document}