% AMP Sequences Generated by ProtFlow with Different CFG Settings % Generated on 2025-08-21 \documentclass{article} \usepackage{booktabs} \usepackage{longtable} \usepackage{array} \usepackage{geometry} \geometry{margin=1in} \begin{document} \section{Generated AMP Sequences with MIC Values} \subsection{No CFG (0.0) Setting} \begin{table}[h!] \centering \caption{All generated AMP sequences for No CFG (0.0) setting with corresponding MIC values.} \label{tab:amp_sequences_no_cfg_00} \begin{tabular}{|c|c|c|} \hline \textbf{Rank} & \textbf{Sequence} & \textbf{MIC (μg/mL)} \\ \hline 1 & \texttt{KQTSDKIWQIWIMMHGLDRPPIQGSLDNDQHWFNGHTVTENLDDKELDFH} & 239.4 \\ \hline 2 & \texttt{GNCSCAHRRATYLQDDHKHTREYCGRNESRKPAGPGCCHDTCWRTLQQKN} & 244.5 \\ \hline 3 & \texttt{ENEFIRHGCMTDYKSNAILNGQNNVTNQIEWWMLREGSQERKEVFQAGPC} & 247.0 \\ \hline 4 & \texttt{GKGEHRYQEIKSDELNTEESNQKCLDKNFNKTYEKGGMMQFDEQANIPSF} & 247.1 \\ \hline 5 & \texttt{GARKDMGWDISPSLHAKWRHSVEDQNMYCTENIPMELNPNCFHVGEVAWI} & 259.2 \\ \hline 6 & \texttt{ETVHQVSRSRREQGEKFPEPKYWGGVCHTGNMQPRSIYFGEQHLGRRKNW} & 260.4 \\ \hline 7 & \texttt{DRSASNHGPRACAQWPCQSRPNGNLHTWCWWYTWSRTTRLYKNMNCEWGS} & 261.3 \\ \hline 8 & \texttt{PRFWVPQMGLRWDNECKEQYGGHSMGKMHFHKIHDEFSIRPPNDALAFGP} & 265.5 \\ \hline 9 & \texttt{TMHDPNRYISENQTNTYNNIPGIDYQYQPWWRMWKDKANPLMPGLTHHTN} & 270.6 \\ \hline 10 & \texttt{ACWSNTSQSACQSIQQNTDHTWFNAYPHSTTRGMYPGMSAGYAQSLCDVE} & 270.9 \\ \hline 11 & \texttt{WMCISPVTQKEESKKPIYTCYVTDSQKMCGGKDSPGSFQFNWRRIGDHPF} & 271.8 \\ \hline 12 & \texttt{HCQQCFSHMDFWEMRSMAITALIAWFGSWFEQRVIFPKMSPDFSHRWDMH} & 272.2 \\ \hline 13 & \texttt{WNCMRYRKPAYATSQPPRMGTLNLCRFSDHNDDVWIHQNISYQCVFECPH} & 272.6 \\ \hline 14 & \texttt{VYHACETAHHNIWGSEHNNGPKTSTPASTWCYWHKLMDVINEPMKMVPFA} & 275.8 \\ \hline 15 & \texttt{AGCRVKAPCHWEPVYSACDAIMMESWHQPCMQVSPCRRYKCMCMIGAPAN} & 276.6 \\ \hline 16 & \texttt{LAVQAHNIHATDFDHTLYQDHFLTLMGTSVISSEEGWDLVGKEIKYGIPK} & 277.7 \\ \hline 17 & \texttt{VCMTVVIAHRMDLSYDYPCWGERRQYGGMTGEHHSAPQWQLWFAPHGPIM} & 278.9 \\ \hline 18 & \texttt{WSFTCSDNDNSLHDLNPYMHLLDSKDDQGKWGVFQHPTCSLRMTCQLNWH} & 279.8 \\ \hline 19 & \texttt{EPDGCTTWPWAIRWRVMIIQCHEPRTHSEYPLSGMPGDFYKEPPMQNPPC} & 280.8 \\ \hline 20 & \texttt{SEEHPPTNMDMVQNVAGCALTIGYAAHISRAEAPKWLHSLLLLVDCWFGP} & 281.5 \\ \hline \end{tabular} \end{table} \subsection{Weak CFG (3.0) Setting} \begin{table}[h!] \centering \caption{All generated AMP sequences for Weak CFG (3.0) setting with corresponding MIC values.} \label{tab:amp_sequences_weak_cfg_30} \begin{tabular}{|c|c|c|} \hline \textbf{Rank} & \textbf{Sequence} & \textbf{MIC (μg/mL)} \\ \hline 1 & \texttt{PSKMPMGYWLHHKYNVCALNPPKHHNNNLKTLMKHSHAHPQPRECNWSWS} & 230.8 \\ \hline 2 & \texttt{SGWRTNDAKCMQWEELYRGRDAPMYKAFTADKRAWVLWWEYHMSHYIVTK} & 232.2 \\ \hline 3 & \texttt{NCPICFKPGHYLALPTPFEGLPFQTTTSWAFWGHLRYICYKHSHVFTRPK} & 249.9 \\ \hline 4 & \texttt{GFEGLKYRPKIQTGQNTRSTAIMFPQCGYPMCKNGEVKAYSEDWNSPGDE} & 253.7 \\ \hline 5 & \texttt{RVYALKILGNDDIALYSNELPSGNLFLWSVATEDCKRYMIMIPADMNEEC} & 258.7 \\ \hline 6 & \texttt{NEEGPCPHNMTNYETGGMCFLAQRVPPKPQKSQWKPSPHEIIMAYWMFSW} & 264.7 \\ \hline 7 & \texttt{GRNRDQSIETHMPAQENDNYGSYKWTKSTCIMGHTFTIYQPMGWTKCCIM} & 266.5 \\ \hline 8 & \texttt{WARKPAYSGMGWANGRDNLFPMDPETLTCEKNSRVQIATYHAEPPSQTPW} & 270.0 \\ \hline 9 & \texttt{ANGEAPIPGFICEIGVFCRTQMCLEHPQCPQIASSSTHKLCQAKKFARWI} & 272.0 \\ \hline 10 & \texttt{TSFRSWWHHQPYFFQCPDGPPGGPVKFNDFRRCKEHRWPRGPWCPALPAE} & 273.2 \\ \hline 11 & \texttt{PGCDADWCNNPKHQVAWFFWRGWWGHLVKPQIYWSGYNPNECLFVQNTEF} & 273.3 \\ \hline 12 & \texttt{YPSRSMTPRNPAYTMHNDCDANHCPQFPWSNLEQTGPVWNHMRPPLEPYI} & 273.9 \\ \hline 13 & \texttt{ETVLSMRQENRQLDFTDSERDWVMHAWLQTATDYFLVPQCCHHHGAWMAI} & 274.6 \\ \hline 14 & \texttt{IETHIWWLQNDSHPCYILVILNPTKKWEYLWPDGWIFKSHCINQADHISF} & 275.8 \\ \hline 15 & \texttt{KVGHQHDLCGKAASNLFMMAFWNIEMKQYHDALSFKNAPIGSNWWCSGRH} & 275.8 \\ \hline 16 & \texttt{WEQCAMSLLSAVFFGMFGDMNIQSGNRIYRCIYPQHYQIPHHEHHWCSYT} & 275.9 \\ \hline 17 & \texttt{GDDIIAGMPEGESRPWAIHYVYVDPNRYAHWGWHSNHRAKAKMTPGLAST} & 276.4 \\ \hline 18 & \texttt{HPYGAHCDVNCAHGNAWCHDFHGDHNMNGEQRREMNTLDEFWSTLMCMSA} & 278.4 \\ \hline 19 & \texttt{SHCTIIPQYIAPGVLGKDEMCEISYGYELPFPYVNCPHRDGHVANYPGKH} & 278.4 \\ \hline 20 & \texttt{PMTHGDQGKTDNTPHSPVTKNMEEVNPACHEQPIPGRLQTSVFLLTNNRK} & 279.1 \\ \hline \end{tabular} \end{table} \subsection{Strong CFG (7.5) Setting} \begin{table}[h!] \centering \caption{All generated AMP sequences for Strong CFG (7.5) setting with corresponding MIC values.} \label{tab:amp_sequences_strong_cfg_75} \begin{tabular}{|c|c|c|} \hline \textbf{Rank} & \textbf{Sequence} & \textbf{MIC (μg/mL)} \\ \hline 1 & \texttt{QWHCCRKQGIVAHNSKFPSKKPVIWHRGEASLERNHKGWDPCNCGPRARP} & 175.4 \\ \hline 2 & \texttt{CRCLQQMFHWSNVKSFAKDQEVMPTELQPYKWWRGRYMPIENSIKMELAY} & 200.8 \\ \hline 3 & \texttt{HWVRLHTEIGVHMGCFLCKWRKCQDIGEKHKDQKEYQVMWMKPQHGACLP} & 243.0 \\ \hline 4 & \texttt{QWLTHVRYITYLLCLYNEICSVLRVYPTSTHLFWRNNREARNTWQWPFFT} & 250.4 \\ \hline 5 & \texttt{TAHNWMFPHLNQQHRKIMRFQWSTDNIGCCGGPSDCNWHQTPDKEPRSRD} & 252.5 \\ \hline 6 & \texttt{STRAIDAAKLMSKLQVTSWNSPHWSHQIGCQIGRYRRGEHCEWDEYWDRC} & 256.3 \\ \hline 7 & \texttt{KLAFPWYEVIPDKASEGANRPPIRDKFYDSPTGPYKQDCPDWPGLMLRWT} & 260.8 \\ \hline 8 & \texttt{QTSSMPNSCTSWHGIKALKYQHAEKSRPPGPNMGLNNRHFTFMHNYKPHY} & 261.2 \\ \hline 9 & \texttt{LHFTHHLDSCRMQWEYLRGNLPRNHIGIPMMGKLLNVAGVEHGGLSQCRY} & 263.5 \\ \hline 10 & \texttt{RTKPTIHCSPIYHSMQGYTNSARPAYWNDNCPMWGILWKDNPSWVERKQH} & 266.8 \\ \hline 11 & \texttt{CETHNMYNWRNLQIESMPCQIKMSRTDSNQGAYEWCSAQGFKGKWICWSW} & 268.0 \\ \hline 12 & \texttt{HHGGARLQDDWGSDRFNEMNIHQHETALCWHTDPMPIKARECWERSQCGC} & 268.4 \\ \hline 13 & \texttt{HNTCSPHLWTGHNKNTPYWEWCGPHCCGTQFNMGGKHQLWGTMQPVMHHN} & 271.8 \\ \hline 14 & \texttt{ATEDSWMENCHDTASQQDINEDQFLHYCWDHIEPSDPITNEWACWKKYEW} & 273.6 \\ \hline 15 & \texttt{MITIGTQRPTYNAIIDTQDHHYRNMPTRRVAHCEETVFWPNRTPKWKQKD} & 275.4 \\ \hline 16 & \texttt{QGMPVGSIQNKHDCEYSYPNYTTYWTHPQQWNSMSRLHGSQGGNDNWLHN} & 275.5 \\ \hline 17 & \texttt{KHKTSGMWELRIFIMAGQTAHDCWTCMGMMNNAEQNAPFTWNQCNQGFNN} & 276.5 \\ \hline 18 & \texttt{CWSSCCWATYPFPAEWVWPQCCTGAARVMFHIHFKETFAMNPWGHCEGAP} & 280.2 \\ \hline 19 & \texttt{TLMFQASLVMYNRKGMFSNKRDGGCNPSWEPSLHNQFPCCVNSKADSGDH} & 280.7 \\ \hline 20 & \texttt{GGNAPMESENANWKPRDFMEYTADDGIASGNFQAKELKTSSKLDDTYNCT} & 282.5 \\ \hline \end{tabular} \end{table} \subsection{Very Strong CFG (15.0) Setting} \begin{table}[h!] \centering \caption{All generated AMP sequences for Very Strong CFG (15.0) setting with corresponding MIC values.} \label{tab:amp_sequences_very_strong_cfg_150} \begin{tabular}{|c|c|c|} \hline \textbf{Rank} & \textbf{Sequence} & \textbf{MIC (μg/mL)} \\ \hline 1 & \texttt{KGLVRIYGSPQTMTECARCTDRCRMHTKSKSRTLSVVIGFYMHPKWKQAY} & 238.7 \\ \hline 2 & \texttt{LRTTRHIEKIWINGNGDAACKDMALHWMKQSECKPEYCMSLPLTRAGMYT} & 241.9 \\ \hline 3 & \texttt{RWFPNTFPAYMQRQKRAQDFRYPGQGGQVIRSTDDHYWCITYRFWIKKEH} & 243.0 \\ \hline 4 & \texttt{NNLKINCGAINCWNPNPAMHRQPGVCTHKIGKMGSIGMCNMAKSHSMYDE} & 252.4 \\ \hline 5 & \texttt{NTSLKATYRWIRCTLECSETFLEGYIEHQLVNHYIECIAQQSEMKKRPYV} & 254.6 \\ \hline 6 & \texttt{LQEWEHVTYDHLSPRTAGTCKGASCQIKCNEFWQTGNNMSQKWGKASRGI} & 256.3 \\ \hline 7 & \texttt{PIWMLRYIVQHASPGQLATHYMAKRGSRTPRSDMHPNEHIHQNFEAHTIW} & 257.7 \\ \hline 8 & \texttt{RNPGVLRWEWQTGNGLMNNESLSLPSPEDTTMMPHVLLVTSTHTGDKEFH} & 263.1 \\ \hline 9 & \texttt{CWYTMGTHKCPAAPLCGSGLYIELTDWWNVLMMAHMPPVFYQMEIPHNLN} & 268.6 \\ \hline 10 & \texttt{AGMQWHNSTPDTYRCPHAWNFDQAKENWHWHVPTVSWRLMLGHGQPFSWW} & 269.4 \\ \hline 11 & \texttt{YEEMMQKGSNDSKCNAFCKWHEQNTNWYPGFCFTWDWWICYYLPEWTQYH} & 270.8 \\ \hline 12 & \texttt{FPVWLLRPWELLGGPAWEQNCFQANPVPSQKQGCWLWDKDLIPAVQDLLP} & 271.4 \\ \hline 13 & \texttt{RAYNMYHSSFDFGKPKSMWVHYPPGCWSTDLFVAAGCSEEGGVRYFNWLI} & 275.9 \\ \hline 14 & \texttt{LVLYPPNMKGCFMWFAPRNSNCNTEITNGFTHNNQTNQFGPVHFPTNNFF} & 276.6 \\ \hline 15 & \texttt{VPQPLNSGARYAKFYQVGQRCDPTRGVPYTGLPFTCQPYEFCSQGCYIWI} & 277.8 \\ \hline 16 & \texttt{THMTCPAQHENWWRKVTGSGTEGGMYGVGHSAALNYGQDPGCHSWERWRQ} & 278.9 \\ \hline 17 & \texttt{WESPFLYPQVEGGAPSHLETTMDQNGVKGAKDWKPHVWDLWGHDGSACQS} & 279.7 \\ \hline 18 & \texttt{SHWWTWGYQGKHWQYDLMEPQGHTNGLWRCNFNSPSARDTEDGICAGRNH} & 280.9 \\ \hline 19 & \texttt{SNNPNMMVHQTASSNAVQTPDQYLQWMDDRPEFRSEGTVHALIPWISAMW} & 282.1 \\ \hline 20 & \texttt{FTDECARHGLVPSMSACWHILCVPGSQSNTNEAENPHPPNWLDTNQHGHM} & 282.3 \\ \hline \end{tabular} \end{table} \section{Summary Statistics} \begin{table}[h!] \centering \caption{Summary statistics of MIC values across different CFG settings.} \label{tab:mic_statistics} \begin{tabular}{|c|c|c|c|c|c|} \hline \textbf{CFG Setting} & \textbf{N} & \textbf{Mean MIC} & \textbf{Min MIC} & \textbf{Max MIC} & \textbf{Std MIC} \\ \hline Strong CFG 7.5 & 20 & 259.2 & 175.4 & 282.5 & 26.2 \\ \hline Weak CFG 3.0 & 20 & 266.7 & 230.8 & 279.1 & 14.2 \\ \hline Very Strong CFG 15.0 & 20 & 266.1 & 238.7 & 282.3 & 13.9 \\ \hline No CFG 0.0 & 20 & 266.7 & 239.4 & 281.5 & 12.8 \\ \hline \end{tabular} \end{table} \end{document}