sync: runs/exp_oracle_ds_7cell_fdr_both_20260424_162210/metrics.json
Browse files
runs/exp_oracle_ds_7cell_fdr_both_20260424_162210/metrics.json
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{
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"best_val_pearson_mean": 0.1355949491262436,
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"val_mse": 59.055801866718205,
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"val_pearson_mean": 0.1355949491262436,
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"val_spearman_mean": 0.08559440821409225,
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"val_pearson_per_cell": [
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0.3394030034542084,
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0.28682589530944824,
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0.000557238410692662
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],
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"val_spearman_per_cell": [
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0.11234947293996811,
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0.0006817488465458155
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],
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"config": {
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"oracle": "deepstarr_7cell",
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"cell_types": [
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"Ex",
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"In",
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"OPC",
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"Ast",
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| 45 |
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"Oli",
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"Mic",
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"End",
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"Ex_corr",
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"In_corr",
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"OPC_corr",
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"Ast_corr",
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"Oli_corr",
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"Mic_corr",
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"End_corr"
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],
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"input_length": 512,
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"epochs": 30,
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"batch_size": 128,
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"learning_rate": 0.002,
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"weight_decay": 0.0001,
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| 61 |
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"val_fraction": 0.1,
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| 62 |
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"seed": 1234,
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| 63 |
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"early_stop_patience": 10,
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| 64 |
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"output_dir": "/extra/zhanglab0/INDV/pengchx3/regureasoner_loop/runs/exp_oracle_ds_7cell_fdr_both_20260424_162210",
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| 65 |
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"device": "cuda",
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| 66 |
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"num_workers": 0,
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| 67 |
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"deepstarr_fc_dim": 256,
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| 68 |
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"deepstarr_conv_channels": [
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256,
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60,
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| 71 |
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60,
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| 72 |
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120
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],
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"deepstarr_conv_kernels": [
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7,
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3,
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5,
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3
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],
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"deepstarr_pool_kernels": [
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3,
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3,
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| 83 |
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3,
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| 84 |
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3
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| 85 |
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],
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| 86 |
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"deepstarr_dropout": 0.4,
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| 87 |
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"enformer_backbone_name": "EleutherAI/enformer-official-rough",
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| 88 |
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"enformer_embed_dim": 3072,
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| 89 |
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"enformer_input_length": 196608,
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| 90 |
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"hyenadna_backbone_name": "LongSafari/hyenadna-tiny-1k-seqlen-hf",
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| 91 |
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"hyenadna_embed_dim": 128,
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| 92 |
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"hyenadna_input_length": 1000,
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| 93 |
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"hyenadna_dtype": "float32",
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| 94 |
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"sei_backbone_name": "FunSei",
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| 95 |
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"sei_embed_dim": 1024,
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| 96 |
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"sei_input_length": 4096
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| 97 |
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}
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| 98 |
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}
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