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motif_classifier/sota_compare_100/compare.json
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| 1 |
+
{
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| 2 |
+
"results": {
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| 3 |
+
"B_deepstarr": {
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| 4 |
+
"best_r2": 0.3429292344715924,
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| 5 |
+
"params_M": 4.099532,
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| 6 |
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"wallclock_s": 15.00752878189087
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| 7 |
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},
|
| 8 |
+
"B_resnet": {
|
| 9 |
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"best_r2": 0.35478676276654847,
|
| 10 |
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"params_M": 3.553892,
|
| 11 |
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"wallclock_s": 20.24140501022339
|
| 12 |
+
},
|
| 13 |
+
"B_basset": {
|
| 14 |
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"best_r2": 0.29846780754100044,
|
| 15 |
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"params_M": 4.712548,
|
| 16 |
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"wallclock_s": 14.181034564971924
|
| 17 |
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},
|
| 18 |
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"A_separate_medium": {
|
| 19 |
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"best_r2": 0.6026718171742165,
|
| 20 |
+
"params_M": 4.1921,
|
| 21 |
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"wallclock_s": 234.54183411598206
|
| 22 |
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},
|
| 23 |
+
"A_separate_resnet": {
|
| 24 |
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"best_r2": 0.49675408534688453,
|
| 25 |
+
"params_M": 3.2833,
|
| 26 |
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"wallclock_s": 669.2795779705048
|
| 27 |
+
},
|
| 28 |
+
"A_separate_basset": {
|
| 29 |
+
"best_r2": 0.2920907629634259,
|
| 30 |
+
"params_M": 6.4769,
|
| 31 |
+
"wallclock_s": 388.2680220603943
|
| 32 |
+
}
|
| 33 |
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},
|
| 34 |
+
"winner": "A_separate_medium",
|
| 35 |
+
"n_motifs_compared": 100,
|
| 36 |
+
"top_motif_ids": [
|
| 37 |
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412,
|
| 38 |
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15,
|
| 39 |
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29,
|
| 40 |
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122,
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| 41 |
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88,
|
| 42 |
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3,
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| 43 |
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2,
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| 44 |
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120,
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| 45 |
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63,
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| 46 |
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555,
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| 47 |
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4,
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| 48 |
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| 49 |
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1,
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| 50 |
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43,
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| 51 |
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| 52 |
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| 53 |
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124,
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| 54 |
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| 55 |
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| 56 |
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| 57 |
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| 58 |
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| 59 |
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| 60 |
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| 61 |
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| 62 |
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| 63 |
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| 64 |
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| 65 |
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| 66 |
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| 67 |
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| 68 |
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| 69 |
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34,
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| 70 |
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86,
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| 71 |
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93,
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| 72 |
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| 73 |
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| 74 |
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| 75 |
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13,
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| 77 |
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31,
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| 78 |
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17,
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| 79 |
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742,
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21,
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| 81 |
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51,
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| 83 |
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80,
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| 84 |
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35,
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| 86 |
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| 87 |
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| 88 |
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| 94 |
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| 95 |
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| 96 |
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| 97 |
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| 98 |
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294,
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| 99 |
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| 100 |
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| 101 |
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| 102 |
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27,
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| 136 |
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117
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| 137 |
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],
|
| 138 |
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"top_motif_names": [
|
| 139 |
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"ZNF384",
|
| 140 |
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"RREB1",
|
| 141 |
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"CTCF",
|
| 142 |
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"TFAP2A",
|
| 143 |
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"TFAP2C",
|
| 144 |
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"SP2",
|
| 145 |
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"SP1",
|
| 146 |
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"TFAP2B",
|
| 147 |
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"PATZ1",
|
| 148 |
+
"FOXP1",
|
| 149 |
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"ZNF263",
|
| 150 |
+
"KLF5",
|
| 151 |
+
"EGR1",
|
| 152 |
+
"ETV5",
|
| 153 |
+
"ZNF454",
|
| 154 |
+
"ZNF281",
|
| 155 |
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"PRDM9",
|
| 156 |
+
"EBF1",
|
| 157 |
+
"ZNF93",
|
| 158 |
+
"ZBED4",
|
| 159 |
+
"THRB",
|
| 160 |
+
"ZNF320",
|
| 161 |
+
"PLAG1",
|
| 162 |
+
"IRF1",
|
| 163 |
+
"KLF7",
|
| 164 |
+
"FOXO1",
|
| 165 |
+
"FOSL2",
|
| 166 |
+
"FOS",
|
| 167 |
+
"KLF15",
|
| 168 |
+
"FOSL1",
|
| 169 |
+
"ZNF213",
|
| 170 |
+
"ASCL1",
|
| 171 |
+
"SP4",
|
| 172 |
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"ZNF740",
|
| 173 |
+
"ZNF530",
|
| 174 |
+
"Erg",
|
| 175 |
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"Pparg",
|
| 176 |
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"ZNF460",
|
| 177 |
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"NFIC",
|
| 178 |
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"KLF9",
|
| 179 |
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"Zfx",
|
| 180 |
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"Plagl1",
|
| 181 |
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"KLF12",
|
| 182 |
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"KLF6",
|
| 183 |
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"NFIB",
|
| 184 |
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"MAZ",
|
| 185 |
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"KLF10",
|
| 186 |
+
"Ebf4",
|
| 187 |
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"KLF2",
|
| 188 |
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"ZNF692",
|
| 189 |
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"ZNF135",
|
| 190 |
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"KLF16",
|
| 191 |
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"KLF14",
|
| 192 |
+
"TFAP2E",
|
| 193 |
+
"KLF4",
|
| 194 |
+
"Spi1",
|
| 195 |
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"OLIG2",
|
| 196 |
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"MAF",
|
| 197 |
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"KLF1",
|
| 198 |
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"EGR2",
|
| 199 |
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"ZBTB24",
|
| 200 |
+
"NHLH1",
|
| 201 |
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"EWSR1-FLI1",
|
| 202 |
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"Rarb",
|
| 203 |
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"EGR4",
|
| 204 |
+
"ETV1",
|
| 205 |
+
"Wt1",
|
| 206 |
+
"FEZF2",
|
| 207 |
+
"SP9",
|
| 208 |
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"TFAP4",
|
| 209 |
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"JUND",
|
| 210 |
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"SPIB",
|
| 211 |
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"E2F6",
|
| 212 |
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"ZNF610",
|
| 213 |
+
"NR2F1",
|
| 214 |
+
"SP3",
|
| 215 |
+
"SP8",
|
| 216 |
+
"BCL11A",
|
| 217 |
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"EGR3",
|
| 218 |
+
"NFIX",
|
| 219 |
+
"GLIS3",
|
| 220 |
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"Ptf1A",
|
| 221 |
+
"NR2C2",
|
| 222 |
+
"MYOG",
|
| 223 |
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"KLF11",
|
| 224 |
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"FLI1",
|
| 225 |
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"THRA",
|
| 226 |
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"GLI3",
|
| 227 |
+
"STAT1",
|
| 228 |
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"NRF1",
|
| 229 |
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"Bhlha15",
|
| 230 |
+
"MEIS2",
|
| 231 |
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"ERF",
|
| 232 |
+
"PLAGL2",
|
| 233 |
+
"EHF",
|
| 234 |
+
"ZBTB7A",
|
| 235 |
+
"ZNF701",
|
| 236 |
+
"RARA",
|
| 237 |
+
"JUNB",
|
| 238 |
+
"INSM1"
|
| 239 |
+
]
|
| 240 |
+
}
|