Upload cycle_70_lab_L0/exp_rl_pb650_gspo_gspo_20260505_232934/motif_score_postRL_multinom_t1.5.md with huggingface_hub
Browse files
cycle_70_lab_L0/exp_rl_pb650_gspo_gspo_20260505_232934/motif_score_postRL_multinom_t1.5.md
ADDED
|
@@ -0,0 +1,27 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# T3 enhancer-editing motif scoring
|
| 2 |
+
|
| 3 |
+
**Predictions**: `/extra/zhanglab0/INDV/pengchx3/regureasoner_loop/runs/exp_rl_pb650_gspo_gspo_20260505_232934/predict_test_n200_postRL_multinom_t1.5.jsonl`
|
| 4 |
+
**Gold**: `/extra/zhanglab0/INDV/pengchx3/regureasoner_loop/data/oracle_filtered_t3/test.enhancer_editing.strat7c.n7k.oracle_filtered_top1.jsonl`
|
| 5 |
+
**N**: 200, parse_rate=1.000
|
| 6 |
+
|
| 7 |
+
## Headline
|
| 8 |
+
|
| 9 |
+
| Metric | Value |
|
| 10 |
+
|---|---:|
|
| 11 |
+
| Mean predicted motif hits / seq | **0.245** |
|
| 12 |
+
| Mean gold motif hits / seq | 0.755 |
|
| 13 |
+
| Pred / Gold ratio | 0.325 |
|
| 14 |
+
| Target-TF motif hit rate | **0.030** (6/200) |
|
| 15 |
+
| Mean predicted GC | 0.239 (gold: 0.529) |
|
| 16 |
+
|
| 17 |
+
## Per-cell
|
| 18 |
+
|
| 19 |
+
| Cell | N | Pred motifs/seq | Gold motifs/seq | Pred GC | Gold GC |
|
| 20 |
+
|---|---:|---:|---:|---:|---:|
|
| 21 |
+
| Mic | 44 | 0.159 | 1.136 | 0.187 | 0.546 |
|
| 22 |
+
| In | 25 | 1.400 | 0.280 | 0.273 | 0.518 |
|
| 23 |
+
| Ex | 48 | 0.042 | 0.729 | 0.210 | 0.492 |
|
| 24 |
+
| End | 8 | 0.250 | 2.500 | 0.362 | 0.534 |
|
| 25 |
+
| OPC | 17 | 0.000 | 1.118 | 0.330 | 0.559 |
|
| 26 |
+
| Ast | 26 | 0.077 | 0.154 | 0.303 | 0.549 |
|
| 27 |
+
| Oli | 32 | 0.031 | 0.500 | 0.195 | 0.535 |
|