Upload folder using huggingface_hub
Browse files- .gitattributes +1 -0
- README.md +112 -0
- config.json +28 -0
- inference_example.py +53 -0
- model.keras +3 -0
.gitattributes
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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model.keras filter=lfs diff=lfs merge=lfs -text
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README.md
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@@ -0,0 +1,112 @@
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---
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license: apache-2.0
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tags:
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- vision
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- medical
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- gerd
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- vision-transformer
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- tensorflow
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- image-classification
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datasets:
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- custom-gerd-dataset
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metrics:
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- accuracy
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- precision
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- recall
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- f1
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model-index:
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- name: GERD Lightweight ViT
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results:
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- task:
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type: image-classification
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name: Image Classification
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dataset:
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name: GERD Augmented Dataset
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type: custom
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metrics:
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- type: accuracy
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value: 0.95
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name: Accuracy
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---
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# GERD Lightweight Vision Transformer 🔬
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This is a lightweight Vision Transformer (ViT) model trained to classify gastroesophageal images into 4 categories:
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- **Esophagitis**: Inflammation of the esophagus
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- **GERD**: Gastroesophageal Reflux Disease
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- **Normal**: Healthy esophagus
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- **Ulcer**: Esophageal ulceration
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## Model Details
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### Architecture
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- **Model Type**: Lightweight Vision Transformer (ViT)
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- **Input Size**: 224x224x3 (RGB)
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- **Patch Size**: 8x8
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- **Projection Dimension**: 64
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- **Transformer Layers**: 4
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- **Attention Heads**: 4
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- **MLP Head Units**: [128, 64]
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- **Output Classes**: 4
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### Training
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- Trained using 5-Fold Cross-Validation
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- Optimizer: Adam (lr=1e-4)
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- Loss: Categorical Crossentropy with Label Smoothing (0.1)
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- Early Stopping with patience=20
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- Data Augmentation applied
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### Performance
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- High accuracy on GERD classification tasks
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- Optimized for medical image analysis
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- Efficient inference with reduced parameters
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## Intended Use
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This model is designed for **research and educational purposes** in medical image analysis. It should **NOT** be used as the sole diagnostic tool in clinical settings.
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### Direct Use
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```python
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import tensorflow as tf
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from PIL import Image
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import numpy as np
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# Load model
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model = tf.keras.models.load_model('model.keras')
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# Prepare image
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image = Image.open('your_image.jpg').resize((224, 224))
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image_array = np.array(image) / 255.0
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image_array = np.expand_dims(image_array, axis=0)
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# Predict
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predictions = model.predict(image_array)
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class_names = ['Esophagitis', 'GERD', 'Normal', 'Ulcer']
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predicted_class = class_names[np.argmax(predictions)]
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confidence = np.max(predictions)
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print(f"Predicted: {predicted_class} (Confidence: {confidence:.2%})")
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```
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## Limitations and Bias
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⚠️ **Important Disclaimers:**
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- This model is trained on a specific dataset and may not generalize to all populations
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- Medical imaging interpretation requires clinical expertise
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- Always consult healthcare professionals for medical decisions
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- The model may have biases based on the training data distribution
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## Training Data
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The model was trained on an augmented GERD dataset containing gastroesophageal images across 4 categories.
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## Citation
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If you use this model, please cite appropriately and acknowledge the original dataset sources.
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## Contact
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For questions or issues, please open an issue in the model repository.
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---
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*Developed for medical image classification research*
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config.json
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{
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"model_type": "vision-transformer",
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"task": "image-classification",
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"image_size": 224,
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"patch_size": 8,
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"projection_dim": 64,
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"transformer_layers": 4,
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"num_heads": 4,
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"mlp_head_units": [
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128,
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64
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],
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"num_classes": 4,
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"class_names": [
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"Esophagitis",
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"GERD",
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"Normal",
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"Ulcer"
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],
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"framework": "tensorflow",
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"preprocessing": {
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"resize": [
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224,
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224
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],
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"normalize": "scale_0_1"
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}
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}
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inference_example.py
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import tensorflow as tf
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from PIL import Image
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import numpy as np
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import requests
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from io import BytesIO
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# Load model
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model = tf.keras.models.load_model('model.keras')
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# Class names
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CLASS_NAMES = ['Esophagitis', 'GERD', 'Normal', 'Ulcer']
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def predict_from_url(image_url):
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response = requests.get(image_url)
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image = Image.open(BytesIO(response.content))
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return predict_image(image)
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def predict_from_path(image_path):
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image = Image.open(image_path)
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return predict_image(image)
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def predict_image(image):
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# Preprocess
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image = image.convert('RGB')
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image = image.resize((224, 224))
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image_array = np.array(image) / 255.0
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image_array = np.expand_dims(image_array, axis=0)
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# Predict
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predictions = model.predict(image_array)[0]
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# Format results
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results = {
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CLASS_NAMES[i]: float(predictions[i])
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for i in range(len(CLASS_NAMES))
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}
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predicted_class = CLASS_NAMES[np.argmax(predictions)]
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confidence = float(np.max(predictions))
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return {
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'predicted_class': predicted_class,
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'confidence': confidence,
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'all_predictions': results
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}
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# Example usage
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if __name__ == "__main__":
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result = predict_from_path('test_image.jpg')
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print(f"Prediction: {result['predicted_class']}")
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print(f"Confidence: {result['confidence']:.2%}")
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print(f"All probabilities: {result['all_predictions']}")
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model.keras
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version https://git-lfs.github.com/spec/v1
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oid sha256:4844c0a050a78acfd92126786d682a7f189b7ad1953ee77385f0fdbf5b2aec3b
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size 938108
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