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#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Evaluation utils for PixelLLM."""
# pylint: disable=g-explicit-length-test
import json
import os
from typing import Any, Dict, Optional, List
from absl import logging
from coco_caption.coco import COCO as COCOCaption
import cv2
# pylint: disable=g-import-not-at-top
try:
from coco_caption.eval import COCOEvalCap
from coco_caption.bleu import Bleu
from coco_caption.cider import Cider
from coco_caption.meteor import Meteor
from coco_caption.rouge import Rouge
from coco_caption.upp_tokenizer import tokenize
except ImportError:
COCOEvalCap = None
Bleu = None
Cider = None
Meteor = None
Rouge = None
tokenize = None
import numpy as np
from pycocotools import mask as mask_api
from scenic.model_lib.base_models import box_utils
from scenic.projects.pixel_llm import densecap_evaluator
# Evaluator without METEOR and SPICE
# This import raises an error on colab.
# pylint: disable=g-import-not-at-top
try:
from pix2seq.metrics.coco_caption_eval import COCOEvalCap as SimpleCOCOEvalCap
except ImportError:
SimpleCOCOEvalCap = None
import tensorflow as tf
class PointEvaluator(object):
"""Class that evaluate the point prediction."""
def __init__(
self, dataset_name: Optional[str] = '', step: Optional[int] = None
):
del dataset_name, step
self.results = []
self._num_examples_added = 0
def add_example(self, prediction: Any, target: Dict[str, np.ndarray]):
"""Compute MSE."""
self._num_examples_added += 1
# [num_caps, max_text_tokens, num_gt_points, 2]
gt_coords = target['points']
# [num_caps, max_text_tokens]
valid_token_mask = target.get(
'token_padding_mask', target['text_tokens'] > 0
)
valid_token_mask *= gt_coords.max(axis=(-2, -1)) > 0
# [num_caps, max_text_tokens, 2]
# or [num_caps, max_text_tokens, num_pred_points, 2]
pred_coords = prediction['point_coords']
if pred_coords.ndim == 3:
# [num_caps, max_text_tokens, 1, 2]
pred_coords = pred_coords.reshape(gt_coords.shape[:-2] + (1, 2))
# normalize coords
height, width = target['size']
gt_coords = gt_coords / np.array([width, height])
pred_coords = pred_coords / np.array([width, height])
# [num_caps, max_tokens, num_pred_points, num_gt_points]
dist = np.mean(
np.abs(
np.expand_dims(pred_coords, axis=3)
- np.expand_dims(gt_coords, axis=2)
),
axis=-1,
)
# only count the dist to the closest GT
# [num_caps, max_tokens, num_pred_points]
dist = np.min(dist, axis=-1).mean(axis=-1)
# [num_caps, max_tokens]
dist *= valid_token_mask
error = dist.sum() / (valid_token_mask.sum() + 1e-8)
self.results.append(error)
def __len__(self):
return self._num_examples_added
def clear(self):
self.results = []
self._num_examples_added = 0
def compute_metrics(
self,
save_dir: str,
clear_annotations: Optional[bool] = True,
skip_evaluate=False,
):
del save_dir, skip_evaluate
result = np.array(self.results).mean()
if clear_annotations:
self.clear()
return {'point_l1': result}
class CaptionEvaluator(object):
"""Class that feeds model outputs to COCO caption evaluation api."""
def __init__(
self, annotations_loc, eval_meteor_spice=False, step: Optional[int] = None
):
self.annotations_loc = annotations_loc
logging.info('Initializing evaluator.')
if self.annotations_loc:
logging.info('Loading annotations from %s.', self.annotations_loc)
self.coco = COCOCaption(self.annotations_loc)
self.annotations = {
'images': [],
'annotations': [],
'type': 'captions',
'info': {},
'licenses': [],
'categories': [{'id': 1, 'name': 'object'}],
}
self.predictions = []
self.pred_image_set = set()
self.gt_image_set = set()
self._num_examples_added = 0
self._num_captions_added = 0
self.eval_meteor_spice = eval_meteor_spice
self.step = step
def add_example(self, prediction: Any, target: Dict[str, np.ndarray]):
"""Add a single example to the evaluator.
Args:
prediction: Model prediction tuple of 3 arrays: boxes, scores, classes.
'boxes' is in shape of `[num_objects, 4]` and 'pred_boxes', 'classes'
are botoh in shape of `[num_objects, num_classes]`. Box coordinates are
absolute values in the input image coordinates. We need to scale them
back to the original image coordinates using information in target.
target: Target dictionary with keys and 'image/id'.
"""
if isinstance(prediction, dict):
pred_caption = prediction['caption']
else:
pred_caption = prediction
self._num_examples_added += 1
id_key = 'image_id'
empty_gt = False
if self.annotations_loc:
# we will use image_id that matches the annotation file
img_id = int(target['image/id'])
else:
# we will create image_id on the fly
img_id = self._num_examples_added
if img_id not in self.gt_image_set:
# avoid adding the same image twice due to repeated sampling.
self.annotations['images'].append({'id': img_id})
for x in target['captions']:
# NOTE: if there is no gt but pred for some images, coco raise error
# we use `empty_gt` to mark these kind of images and ignore them
if x: # remove empty captions from padding.
self._num_captions_added += 1
self.annotations['annotations'].append(
{'id': self._num_captions_added, id_key: img_id, 'caption': x}
)
# NOTE: this marks even img_id will be added into gt_image_set, there
# is no gt for it, since it's filtered out above
empty_gt = sum(len(t) for t in target['captions']) == 0
self.gt_image_set.add(img_id)
single_prediction = {
id_key: img_id,
'caption': pred_caption,
}
if img_id not in self.pred_image_set:
if empty_gt:
logging.warn('Image %s does not have any ground truth caption', img_id)
else:
self.predictions.append(single_prediction)
else:
logging.warn('Duplicate image %s not being added again', img_id)
self.pred_image_set.add(img_id)
def compute_metrics(
self,
save_dir: str,
clear_annotations: Optional[bool] = True,
skip_evaluate=False,
):
"""Computes the metrics for all added predictions."""
json_file_path = self.write_pred_annotations_to_file(save_dir)
if skip_evaluate:
return {}
if not self.annotations_loc:
gt_file_path = self.write_pred_annotations_to_file(
save_dir, is_groundtruth=True
)
self.coco = COCOCaption(gt_file_path)
coco_res = self.coco.loadRes(json_file_path)
evaluator_class = (
COCOEvalCap if (self.eval_meteor_spice) else SimpleCOCOEvalCap
)
coco_eval = evaluator_class(self.coco, coco_res)
coco_eval.params['image_id'] = coco_res.getImgIds()
coco_eval.evaluate()
results = coco_eval.eval
if clear_annotations:
self.clear()
return results
def clear(self):
self.predictions = []
self.pred_image_set = set()
self._num_examples_added = 0
self._num_captions_added = 0
def __len__(self):
return self._num_examples_added
def write_pred_annotations_to_file(
self, path: str, is_groundtruth: bool = False
):
"""Writes predictions to file in JSON format.
Args:
path: Path to write the prediction annotation JSON file.
is_groundtruth: bool; if the file is ground truth or prediction.
Returns:
json_file_path: path to the saved json
"""
if not tf.io.gfile.exists(path):
tf.io.gfile.makedirs(path)
fname_app = 'predictions' if not is_groundtruth else 'annotations'
if self.step:
json_file_name = f'caption_{fname_app}_{self.step}.json'
else:
json_file_name = f'caption_{fname_app}.json'
json_file_path = os.path.join(path, json_file_name)
logging.info('Saving predictions to %s.', json_file_path)
def _convert_to_serializable(obj):
if isinstance(obj, np.ndarray):
return obj.tolist()
elif isinstance(obj, np.float32):
return float(obj)
else:
raise TypeError(f'Unserializable object {obj} of type {type(obj)}')
with tf.io.gfile.GFile(json_file_path, 'w') as f:
f.write(
json.dumps(
self.predictions if not is_groundtruth else self.annotations,
default=_convert_to_serializable,
)
)
logging.info('Predicted annotations are stored in %s.', json_file_path)
return json_file_path
def rescale_and_convert_boxes_to_xywh(boxes, input_size, orig_size):
"""Rescale boxes, and convert format to xywh."""
h, w = orig_size
input_h, input_w = np.asarray(input_size)
scale_factor = np.array([w, h, w, h]) / np.array(
[input_w, input_h, input_w, input_h])
boxes = boxes * scale_factor[np.newaxis, :]
boxes = np.maximum(boxes, 0)
boxes[:, [0, 2]] = np.minimum(boxes[:, [0, 2]], w)
boxes[:, [1, 3]] = np.minimum(boxes[:, [1, 3]], h)
boxes[:, 2] -= boxes[:, 0]
boxes[:, 3] -= boxes[:, 1]
return boxes
def rescale_and_encode_masks(
masks, input_size, padded_size, orig_size, mask_threshold
):
"""Rescale masks, and encode into COCO format."""
input_h, input_w = input_size
padded_h, padded_w = padded_size
h, w = orig_size
out_masks = []
for mask in masks:
mask_h, mask_w = mask.shape
mask_input_h = int(input_h * (mask_h / padded_h))
mask_input_w = int(input_w * (mask_w / padded_w))
mask = (
cv2.resize(
mask[:mask_input_h, :mask_input_w],
(w, h),
interpolation=cv2.INTER_LINEAR,
)
> mask_threshold
)
out_masks.append(mask_api.encode(
np.asfortranarray(mask)
))
return out_masks
def polygons_to_bitmask(
polygons: List[np.ndarray], height: int, width: int
) -> np.ndarray:
"""Converts polygons to bitmask.
Reference:
https://github.com/facebookresearch/detectron2/blob/main/detectron2/structures/masks.py#L22
Args:
polygons(list[ndarray]): each array has shape (Nx2,)
height(int):
width(int):
Returns:
ndarray: a bool mask of shape (height, width)
"""
if not len(polygons):
# COCOAPI does not support empty polygons
return np.zeros((height, width)).astype(bool)
rles = mask_api.frPyObjects(polygons, height, width)
rle = mask_api.merge(rles)
return mask_api.decode(rle).astype(bool)
def decode_to_mask(segm, image_size):
"""Converts segmentation to mask."""
if isinstance(segm, list):
# polygon
mask = polygons_to_bitmask(segm, *image_size)
elif isinstance(segm, dict):
# COCO RLE
mask = mask_api.decode(segm)
elif isinstance(segm, np.ndarray):
assert (
segm.ndim == 2
), 'Expect segmentation of 2 dimensions, got {}.'.format(segm.ndim)
# mask array
mask = segm
else:
raise ValueError(
"Cannot convert segmentation of type '{}' to BitMasks!"
'Supported types are: polygons as list[list[float] or ndarray],'
' COCO-style RLE as a dict, or a binary segmentation mask '
' in a 2D numpy array of shape HxW.'.format(type(segm))
)
return mask
def mask_to_box(mask):
"""Converts mask to box."""
boxes = np.zeros((4,), dtype=np.float32)
x_any = np.any(mask, axis=0)
y_any = np.any(mask, axis=1)
x = np.where(x_any)[0]
y = np.where(y_any)[0]
if len(x) and len(y):
boxes = np.array([x[0], y[0], x[-1] + 1, y[-1] + 1], dtype=np.float32)
return boxes
class RefCocoEvaluator(object):
"""Class that evaluates the RefCOCO.
Reference: https://github.com/ashkamath/mdetr/blob/main/datasets/refexp.py
"""
def __init__(
self,
dataset_name: str,
annotations_loc: str,
k=(1,),
iou_threshold=0.5,
step: Optional[int] = None,
):
self.dataset_name = dataset_name
self.annotations_loc = annotations_loc
if self.annotations_loc:
logging.info('Loading refer annotations from %s.', self.annotations_loc)
self.annotations = json.load(tf.io.gfile.GFile(self.annotations_loc))
else:
self.annotations = {
'images': [],
'annotations': [],
'type': 'refer',
'info': {},
'licenses': [],
'categories': [{'id': 1, 'name': 'object'}],
}
self.predictions = []
self.pred_image_set = set()
self.gt_image_set = set()
self.k = k
self.iou_threshold = iou_threshold
self.mask_threshold = 0.
# self.results = []
self._num_examples_added = 0
self.step = step
def add_example(self, prediction: Any, target: Dict[str, np.ndarray]):
"""Compute Precision."""
boxes = prediction['detection_boxes']
masks = prediction.get('detection_masks', None)
boxes = rescale_and_convert_boxes_to_xywh(
boxes, target['size'], target['orig_size']
)
boxes = np.asarray(boxes).tolist()
if masks is not None:
masks = rescale_and_encode_masks(
masks,
target['size'],
target['padded_size'],
target['orig_size'],
self.mask_threshold,
)
img_id = int(target['image/id'])
if img_id in self.pred_image_set:
logging.warn('Duplicate image %s not being added again', img_id)
return
self.pred_image_set.add(img_id)
for i in range(len(boxes)):
refexp_id = int(target['refexp_ids'][i])
# [4], in XYXY abs format
pred_box = boxes[i]
caption = target['captions'][i]
if not refexp_id > 0:
continue
self._num_examples_added += 1
single_pred = {
'id': refexp_id,
'image_id': img_id,
'bbox': pred_box,
'refexp': caption,
}
if masks is not None:
single_pred['segmentation'] = masks[i]
self.predictions.append(single_pred)
# create annotation json
if not self.annotations_loc and img_id not in self.gt_image_set:
# avoid adding the same image twice due to repeated sampling.
self.annotations['images'].append({'id': img_id})
gt_boxes = target['boxes']
gt_boxes = rescale_and_convert_boxes_to_xywh(
gt_boxes, target['size'], target['orig_size']
)
gt_boxes = np.asarray(gt_boxes).tolist()
for i in range(len(gt_boxes)):
gt_box = gt_boxes[i]
refexp_id = int(target['refexp_ids'][i])
if not refexp_id > 0:
continue
caption = target['captions'][i]
self.annotations['annotations'].append({
'id': refexp_id,
'image_id': img_id,
'bbox': gt_box,
'refexp': caption,
})
self.gt_image_set.add(img_id)
def __len__(self):
return self._num_examples_added
def clear(self):
self.predictions = []
self._num_examples_added = 0
self.pred_image_set = set()
self.gt_image_set = set()
def write_pred_annotations_to_file(
self, path: str, is_groundtruth: bool = False
):
"""Writes predictions to file in JSON format.
Args:
path: Path to write the prediction annotation JSON file.
is_groundtruth: bool; if the file is ground truth or prediction.
Returns:
json_file_path: path to the saved json
"""
if not tf.io.gfile.exists(path):
tf.io.gfile.makedirs(path)
fname_app = 'predictions' if not is_groundtruth else 'annotations'
if self.step:
json_file_name = f'{self.dataset_name}_{fname_app}_{self.step}.json'
else:
json_file_name = f'{self.dataset_name}_{fname_app}.json'
json_file_path = os.path.join(path, json_file_name)
logging.info('Saving predictions to %s.', json_file_path)
def _convert_to_serializable(obj):
if isinstance(obj, np.ndarray):
return obj.tolist()
elif isinstance(obj, np.float32):
return float(obj)
else:
raise TypeError(f'Unserializable object {obj} of type {type(obj)}')
with tf.io.gfile.GFile(json_file_path, 'w') as f:
f.write(
json.dumps(
self.predictions if not is_groundtruth else self.annotations,
default=_convert_to_serializable,
)
)
logging.info('Predicted annotations are stored in %s.', json_file_path)
return json_file_path
def compute_metrics(
self,
save_dir: str,
clear_annotations: Optional[bool] = True,
skip_evaluate=False,
) -> Dict[str, Any]:
"""Computes the metrics for all added predictions."""
self.write_pred_annotations_to_file(save_dir)
if not self.annotations_loc:
self.write_pred_annotations_to_file(save_dir, is_groundtruth=True)
if skip_evaluate:
return {}
pred_map = {d['id']: idx for idx, d in enumerate(self.predictions)}
# NOTE(jiaruixu): handle coco style annotation
if 'refexp_id' in self.annotations['annotations'][0]:
gt_anno_map = {}
for idx, d in enumerate(self.annotations['annotations']):
refexp_ids = d['refexp_id']
for refexp_id in refexp_ids:
gt_anno_map[refexp_id] = idx
else:
gt_anno_map = {
d['id']: idx for idx, d in enumerate(self.annotations['annotations'])
}
gt_image_map = {
d['id']: idx for idx, d in enumerate(self.annotations['images'])
}
eval_seg = (
'segmentation' in self.predictions[0]
and 'segmentation' in self.annotations['annotations'][0]
)
box_tp_list = []
seg_inter_list = []
seg_union_list = []
seg_box_tp_list = []
for refexp_id in pred_map:
pred = self.predictions[pred_map[refexp_id]]
gt_anno = self.annotations['annotations'][gt_anno_map[refexp_id]]
# single box
pred_box = np.array(pred['bbox']).reshape(-1, 4)
gt_box = np.array(gt_anno['bbox']).reshape(-1, 4)
pred_box[:, 2:4] += pred_box[:, :2]
gt_box[:, 2:4] += gt_box[:, :2]
box_iou, _ = box_utils.box_iou(pred_box, gt_box, np_backbone=np)
for k in self.k:
box_tp_list.append(max(box_iou[:k]) > self.iou_threshold)
if eval_seg:
gt_image = self.annotations['images'][gt_image_map[gt_anno['image_id']]]
image_size = (gt_image['height'], gt_image['width'])
pred_mask = decode_to_mask(pred['segmentation'], image_size)
gt_mask = decode_to_mask(gt_anno['segmentation'], image_size)
cur_inter = (pred_mask & gt_mask).sum()
cur_union = (pred_mask | gt_mask).sum()
seg_inter_list.append(cur_inter)
seg_union_list.append(cur_union)
pred_seg_box = mask_to_box(pred_mask).reshape(-1, 4)
seg_box_iou, _ = box_utils.box_iou(pred_seg_box, gt_box, np_backbone=np)
for k in self.k:
seg_box_tp_list.append(max(seg_box_iou[:k]) > self.iou_threshold)
# compute mean over all refexp
box_tp = (
np.array(box_tp_list).reshape(len(pred_map), len(self.k)).mean(axis=0)
)
metrics = {
f'box_Precision@{k}': result for k, result in zip(self.k, box_tp)
}
if eval_seg:
# compute mean over all refexp
seg_box_tp = (
np.array(seg_box_tp_list)
.reshape(len(pred_map), len(self.k))
.mean(axis=0)
)
metrics.update(
{
f'seg_box_Precision@{k}': result
for k, result in zip(self.k, seg_box_tp)
}
)
seg_inter_list = np.array(seg_inter_list)
seg_union_list = np.array(seg_union_list)
metrics['seg_cIoU'] = seg_inter_list.mean() / (
seg_union_list.mean() + 1e-5
)
metrics['seg_gIoU'] = (seg_inter_list / (seg_union_list + 1e-5)).mean()
metrics['seg_AP'] = (
(seg_inter_list / (seg_union_list + 1e-5)) > self.iou_threshold
).mean()
if clear_annotations:
self.clear()
return metrics
class DensecapEvaluator(object):
"""DensecapEvaluator wrapper."""
def __init__(self, dataset_name: str, annotations_loc, eval_meteor=True,
ignore_empty_string=True,
step: Optional[int] = None):
self.dataset_name = dataset_name
self.step = step
self.evaluator = densecap_evaluator.DensecapEval(
annotations_loc, eval_meteor=eval_meteor,
ignore_empty_string=ignore_empty_string)
self.predictions = []
self._num_examples_added = 0
self.pred_image_set = set()
def add_example(self, prediction: Any, target: Dict[str, np.ndarray]):
"""Add prediction of a single image to the evaluator.
Args:
prediction: Model prediction tuple of 4 arrays: boxes, scores, classes,
captions. 'boxes' is in shape of `[num_objects, 4]` and 'pred_boxes',
'classes' are botoh in shape of `[num_objects, num_classes]`. 'captions'
is a list of strings. Box coordinates are absolute values in the input
image coordinates. We need to scale them back to the original image
coordinates using information in target.
target: Target dictionary with keys 'orig_size', 'size', and 'image/id'.
"""
boxes = prediction['detection_boxes']
scores = prediction['detection_scores']
captions = prediction['captions']
boxes = rescale_and_convert_boxes_to_xywh(
boxes, target['size'], target['orig_size']
)
boxes = np.asarray(boxes).tolist()
img_id = int(target['image/id'])
if img_id in self.pred_image_set:
logging.warn('Duplicate image %s not being added again', img_id)
return
self.pred_image_set.add(img_id)
for bbox, score, caption in zip(
boxes, scores, captions):
single_classification = {
'image_id': img_id,
'category_id': 0,
'bbox': bbox,
'score': score,
'caption': caption,
}
self.predictions.append(single_classification)
self._num_examples_added += 1
# pytype: disable=signature-mismatch
def compute_metrics(
self,
save_dir: str,
clear_annotations: Optional[bool] = True,
skip_evaluate=False,
) -> Dict[str, Any]:
# pytype: enable=signature-mismatch
"""Computes the metrics for all added predictions."""
if self.step:
fname_app = f'{self.dataset_name}_{self.step}.json'
else:
fname_app = f'{self.dataset_name}.json'
self.write_pred_annotations_to_file(save_dir, fname_app=fname_app)
if skip_evaluate:
return {}
results = self.evaluator.compute_metrics(self.predictions)
if clear_annotations:
self.clear()
return results
def clear(self):
self.predictions = []
self._num_examples_added = 0
self.pred_image_set = set()
def __len__(self):
return self._num_examples_added
def write_pred_annotations_to_file(self,
path: str,
fname_app: Optional[str] = None):
"""Writes predictions to file in JSON format.
Args:
path: Path to write the prediction annotation JSON file.
fname_app: Optional string to append to the file name.
"""
if not tf.io.gfile.exists(path):
tf.io.gfile.makedirs(path)
json_file_name = f"predictions{fname_app if fname_app else ''}.json"
json_file_path = os.path.join(path, json_file_name)
def _convert_to_serializable(obj):
if isinstance(obj, np.ndarray):
return obj.tolist()
elif isinstance(obj, np.float32):
return float(obj)
else:
raise TypeError(f'Unserializable object {obj} of type {type(obj)}')
with tf.io.gfile.GFile(json_file_path, 'w') as f:
f.write(
json.dumps(
self.predictions,
default=_convert_to_serializable))
logging.info('Predicted annotations are stored in %s.', json_file_path)
class LocaEvaluator(object):
"""Location-conditioned Caption wrapper."""
merge_gt_boxes_iou = 0.7
def __init__(self, dataset_name: str,
step: Optional[int] = None,
merge_gt_boxes: Optional[bool] = False,
meteor_jar_path: Optional[str] = None,
java_jre_path: Optional[str] = None):
self.dataset_name = dataset_name
self.merge_gt_boxes = merge_gt_boxes
self.step = step
self.predictions = []
self._num_examples_added = 0
self._num_captions_added = 0
self.pred_image_set = set()
self.meteor_jar_path = meteor_jar_path
self.java_jre_path = java_jre_path
self.annotations = {
'images': [],
'annotations': [],
'type': 'captions',
'info': {},
'licenses': [],
'categories': [{'id': 1, 'name': 'object'}],
}
@staticmethod
def merge_gt_anno(gts, iou_thresh, is_gt=True):
"""VG ground truth are overlaping. We need to merge them before evaluating.
Original code:
github.com/jcjohnson/densecap/blob/maste*/densecap/box_utils.lua#L590
github.com/jcjohnson/densecap/blob/maste*/eval/eval_utils.lua#L105
Args:
gts: gts of a single image. list of dicts, each with the following keys:
'bbox': list of 4 floats in order (l, t, w, h)
'caption': a string.
...
iou_thresh: float
is_gt: bool
Returns:
new_gts: list of dicts. Might have different length from the input.
'bbox': list of 4 floats in order (l, t, w, h)
'captions': list of strings.
"""
new_gts = []
if not gts:
return new_gts
gt_boxes = np.asarray([x['bbox'] for x in gts], dtype=np.float32)
ious, _ = box_utils.box_iou(gt_boxes, gt_boxes, np_backbone=np) # N x N
while True:
can_merge = ious >= iou_thresh
# Find the largest cluster and merge it.
num_merges = can_merge.sum(axis=1) # N
ind = np.argmax(num_merges) # int
if num_merges[ind] == 0:
break
merge_inds = np.nonzero(can_merge[ind])[0]
new_box = gt_boxes[merge_inds].mean(axis=0)
all_captions = [gts[x]['caption'].replace('\n', '') for x in merge_inds]
for merge_ind in merge_inds:
if is_gt:
new_gt = {
'bbox': new_box,
'captions': all_captions,
'id': gts[merge_ind]['id'],
}
else:
new_gt = {
'bbox': new_box,
'caption': gts[merge_ind]['caption'],
'id': gts[merge_ind]['id'],
}
new_gts.append(new_gt)
ious[merge_inds, :] = 0.0
ious[:, merge_inds] = 0.0
return new_gts
def add_example(self, prediction: Any, target: Dict[str, np.ndarray]):
"""Add prediction of a single image to the evaluator.
Args:
prediction: Model prediction tuple of 4 arrays: boxes, scores, classes,
captions. 'boxes' is in shape of `[num_objects, 4]` and 'pred_boxes',
'classes' are botoh in shape of `[num_objects, num_classes]`. 'captions'
is a list of strings. Box coordinates are absolute values in the input
image coordinates. We need to scale them back to the original image
coordinates using information in target.
target: Target dictionary with keys 'orig_size', 'size', and 'image/id'.
"""
captions = prediction['captions']
boxes = prediction['detection_boxes']
gt_captions = target['captions']
gt_boxes = target['boxes']
boxes = rescale_and_convert_boxes_to_xywh(
boxes, target['size'], target['orig_size']
)
boxes = np.asarray(boxes).tolist()
gt_boxes = rescale_and_convert_boxes_to_xywh(
gt_boxes, target['size'], target['orig_size']
)
gt_boxes = np.asarray(gt_boxes).tolist()
assert len(boxes) == len(captions)
assert len(gt_boxes) == len(boxes)
assert len(gt_captions) == len(captions)
img_id = int(target['image/id'])
if img_id in self.pred_image_set:
logging.warn('Duplicate image %s not being added again', img_id)
return
self.pred_image_set.add(img_id)
self.annotations['images'].append({'id': self._num_captions_added})
cur_preds = []
cur_annos = []
for caption, box, gt_caption, gt_box in zip(
captions, boxes, gt_captions, gt_boxes
):
if max(gt_box) <= 0:
continue
single_classification = {
'image_id': img_id,
'id': self._num_captions_added,
'category_id': 0,
'bbox': box,
'caption': caption,
}
single_annotation = {
'image_id': img_id,
'id': self._num_captions_added,
'category_id': 0,
'bbox': gt_box,
'caption': gt_caption,
}
# self.annotations['annotations'].append(single_annotation)
# self.predictions.append(single_classification)
cur_preds.append(single_classification)
cur_annos.append(single_annotation)
self._num_captions_added += 1
if self.merge_gt_boxes:
cur_preds = self.merge_gt_anno(
cur_preds, self.merge_gt_boxes_iou, is_gt=False
)
cur_annos = self.merge_gt_anno(cur_annos, self.merge_gt_boxes_iou)
self.predictions.extend(cur_preds)
self.annotations['annotations'].extend(cur_annos)
self._num_examples_added += 1
# pytype: disable=signature-mismatch
def compute_metrics(
self,
save_dir: str,
clear_annotations: Optional[bool] = True,
skip_evaluate=False,
) -> Dict[str, Any]:
# pytype: enable=signature-mismatch
"""Computes the metrics for all added predictions."""
if self.step:
fname_app = f'{self.dataset_name}_{self.step}.json'
else:
fname_app = f'{self.dataset_name}.json'
self.write_pred_annotations_to_file(save_dir, fname_app=fname_app)
if skip_evaluate:
return {}
res = {}
gts = {}
for pred in self.predictions:
if 'captions' in pred:
res[pred['id']] = [{'caption': c} for c in pred['captions']]
else:
res[pred['id']] = [pred]
for anno in self.annotations['annotations']:
if 'captions' in anno:
gts[anno['id']] = [{'caption': c} for c in anno['captions']]
else:
gts[anno['id']] = [anno]
res = tokenize(res)
gts = tokenize(gts)
scorers = [
(Rouge(), 'ROUGE_L'),
(Cider(), 'CIDEr'),
(Bleu(), 'BLEU-4'),
(Meteor(), 'Meteor'),
]
results = {}
for scorer, method in scorers:
logging.info('computing %s score...', scorer.method())
score, _ = scorer.compute_score(gts, res)
results[method] = score
if clear_annotations:
self.clear()
return results
def clear(self):
self.predictions = []
self._num_examples_added = 0
self._num_captions_added = 0
self.pred_image_set = set()
def __len__(self):
return self._num_examples_added
def write_pred_annotations_to_file(self,
path: str,
fname_app: Optional[str] = None):
"""Writes predictions to file in JSON format.
Args:
path: Path to write the prediction annotation JSON file.
fname_app: Optional string to append to the file name.
"""
if not tf.io.gfile.exists(path):
tf.io.gfile.makedirs(path)
json_file_name = f"predictions{fname_app if fname_app else ''}.json"
json_file_path = os.path.join(path, json_file_name)
def _convert_to_serializable(obj):
if isinstance(obj, np.ndarray):
return obj.tolist()
elif isinstance(obj, np.float32):
return float(obj)
else:
raise TypeError(f'Unserializable object {obj} of type {type(obj)}')
with tf.io.gfile.GFile(json_file_path, 'w') as f:
f.write(
json.dumps(
self.predictions,
default=_convert_to_serializable))
logging.info('Predicted annotations are stored in %s.', json_file_path)
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