diff --git "a/create_bedmap_dataset.ipynb" "b/create_bedmap_dataset.ipynb"
new file mode 100644--- /dev/null
+++ "b/create_bedmap_dataset.ipynb"
@@ -0,0 +1,2393 @@
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+ " comm.open();\n",
+ " if (msg_handler) {\n",
+ " comm.onMsg = msg_handler;\n",
+ " }\n",
+ " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
+ " var comm_promise = google.colab.kernel.comms.open(comm_id)\n",
+ " comm_promise.then((comm) => {\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " if (msg_handler) {\n",
+ " var messages = comm.messages[Symbol.asyncIterator]();\n",
+ " function processIteratorResult(result) {\n",
+ " var message = result.value;\n",
+ " var content = {data: message.data};\n",
+ " var metadata = message.metadata || {comm_id};\n",
+ " var msg = {content, metadata}\n",
+ " msg_handler(msg);\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " }) \n",
+ " var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n",
+ " return comm_promise.then((comm) => {\n",
+ " comm.send(data, metadata, buffers, disposeOnDone);\n",
+ " });\n",
+ " };\n",
+ " var comm = {\n",
+ " send: sendClosure\n",
+ " };\n",
+ " }\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " return comm;\n",
+ " }\n",
+ " window.PyViz.comm_manager = new JupyterCommManager();\n",
+ " \n",
+ "\n",
+ "\n",
+ "var JS_MIME_TYPE = 'application/javascript';\n",
+ "var HTML_MIME_TYPE = 'text/html';\n",
+ "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n",
+ "var CLASS_NAME = 'output';\n",
+ "\n",
+ "/**\n",
+ " * Render data to the DOM node\n",
+ " */\n",
+ "function render(props, node) {\n",
+ " var div = document.createElement(\"div\");\n",
+ " var script = document.createElement(\"script\");\n",
+ " node.appendChild(div);\n",
+ " node.appendChild(script);\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when a new output is added\n",
+ " */\n",
+ "function handle_add_output(event, handle) {\n",
+ " var output_area = handle.output_area;\n",
+ " var output = handle.output;\n",
+ " if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
+ " return\n",
+ " }\n",
+ " var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
+ " var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
+ " if (id !== undefined) {\n",
+ " var nchildren = toinsert.length;\n",
+ " var html_node = toinsert[nchildren-1].children[0];\n",
+ " html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var scripts = [];\n",
+ " var nodelist = html_node.querySelectorAll(\"script\");\n",
+ " for (var i in nodelist) {\n",
+ " if (nodelist.hasOwnProperty(i)) {\n",
+ " scripts.push(nodelist[i])\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " scripts.forEach( function (oldScript) {\n",
+ " var newScript = document.createElement(\"script\");\n",
+ " var attrs = [];\n",
+ " var nodemap = oldScript.attributes;\n",
+ " for (var j in nodemap) {\n",
+ " if (nodemap.hasOwnProperty(j)) {\n",
+ " attrs.push(nodemap[j])\n",
+ " }\n",
+ " }\n",
+ " attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n",
+ " newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
+ " oldScript.parentNode.replaceChild(newScript, oldScript);\n",
+ " });\n",
+ " if (JS_MIME_TYPE in output.data) {\n",
+ " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
+ " }\n",
+ " output_area._hv_plot_id = id;\n",
+ " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
+ " window.PyViz.plot_index[id] = Bokeh.index[id];\n",
+ " } else {\n",
+ " window.PyViz.plot_index[id] = null;\n",
+ " }\n",
+ " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
+ " var bk_div = document.createElement(\"div\");\n",
+ " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var script_attrs = bk_div.children[0].attributes;\n",
+ " for (var i = 0; i < script_attrs.length; i++) {\n",
+ " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
+ " }\n",
+ " // store reference to server id on output_area\n",
+ " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when an output is cleared or removed\n",
+ " */\n",
+ "function handle_clear_output(event, handle) {\n",
+ " var id = handle.cell.output_area._hv_plot_id;\n",
+ " var server_id = handle.cell.output_area._bokeh_server_id;\n",
+ " if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
+ " var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
+ " if (server_id !== null) {\n",
+ " comm.send({event_type: 'server_delete', 'id': server_id});\n",
+ " return;\n",
+ " } else if (comm !== null) {\n",
+ " comm.send({event_type: 'delete', 'id': id});\n",
+ " }\n",
+ " delete PyViz.plot_index[id];\n",
+ " if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
+ " var doc = window.Bokeh.index[id].model.document\n",
+ " doc.clear();\n",
+ " const i = window.Bokeh.documents.indexOf(doc);\n",
+ " if (i > -1) {\n",
+ " window.Bokeh.documents.splice(i, 1);\n",
+ " }\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle kernel restart event\n",
+ " */\n",
+ "function handle_kernel_cleanup(event, handle) {\n",
+ " delete PyViz.comms[\"hv-extension-comm\"];\n",
+ " window.PyViz.plot_index = {}\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle update_display_data messages\n",
+ " */\n",
+ "function handle_update_output(event, handle) {\n",
+ " handle_clear_output(event, {cell: {output_area: handle.output_area}})\n",
+ " handle_add_output(event, handle)\n",
+ "}\n",
+ "\n",
+ "function register_renderer(events, OutputArea) {\n",
+ " function append_mime(data, metadata, element) {\n",
+ " // create a DOM node to render to\n",
+ " var toinsert = this.create_output_subarea(\n",
+ " metadata,\n",
+ " CLASS_NAME,\n",
+ " EXEC_MIME_TYPE\n",
+ " );\n",
+ " this.keyboard_manager.register_events(toinsert);\n",
+ " // Render to node\n",
+ " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
+ " render(props, toinsert[0]);\n",
+ " element.append(toinsert);\n",
+ " return toinsert\n",
+ " }\n",
+ "\n",
+ " events.on('output_added.OutputArea', handle_add_output);\n",
+ " events.on('output_updated.OutputArea', handle_update_output);\n",
+ " events.on('clear_output.CodeCell', handle_clear_output);\n",
+ " events.on('delete.Cell', handle_clear_output);\n",
+ " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n",
+ "\n",
+ " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
+ " safe: true,\n",
+ " index: 0\n",
+ " });\n",
+ "}\n",
+ "\n",
+ "if (window.Jupyter !== undefined) {\n",
+ " try {\n",
+ " var events = require('base/js/events');\n",
+ " var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
+ " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
+ " register_renderer(events, OutputArea);\n",
+ " }\n",
+ " } catch(err) {\n",
+ " }\n",
+ "}\n"
+ ],
+ "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } else {\n window.PyViz.plot_index[id] = null;\n }\n } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n var bk_div = document.createElement(\"div\");\n bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n var script_attrs = bk_div.children[0].attributes;\n for (var i = 0; i < script_attrs.length; i++) {\n toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n }\n // store reference to server id on output_area\n output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n var id = handle.cell.output_area._hv_plot_id;\n var server_id = handle.cell.output_area._bokeh_server_id;\n if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n"
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/vnd.holoviews_exec.v0+json": "",
+ "text/html": [
+ "
\n",
+ ""
+ ]
+ },
+ "metadata": {
+ "application/vnd.holoviews_exec.v0+json": {
+ "id": "p1002"
+ }
+ },
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "text/html": [
+ ""
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/javascript": [
+ "(function(root) {\n",
+ " function now() {\n",
+ " return new Date();\n",
+ " }\n",
+ "\n",
+ " const force = false;\n",
+ " const py_version = '3.6.3'.replace('rc', '-rc.').replace('.dev', '-dev.');\n",
+ " const reloading = true;\n",
+ " const Bokeh = root.Bokeh;\n",
+ "\n",
+ " // Set a timeout for this load but only if we are not already initializing\n",
+ " if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n",
+ " root._bokeh_timeout = Date.now() + 5000;\n",
+ " root._bokeh_failed_load = false;\n",
+ " }\n",
+ "\n",
+ " function run_callbacks() {\n",
+ " try {\n",
+ " root._bokeh_onload_callbacks.forEach(function(callback) {\n",
+ " if (callback != null)\n",
+ " callback();\n",
+ " });\n",
+ " } finally {\n",
+ " delete root._bokeh_onload_callbacks;\n",
+ " }\n",
+ " console.debug(\"Bokeh: all callbacks have finished\");\n",
+ " }\n",
+ "\n",
+ " function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n",
+ " if (css_urls == null) css_urls = [];\n",
+ " if (js_urls == null) js_urls = [];\n",
+ " if (js_modules == null) js_modules = [];\n",
+ " if (js_exports == null) js_exports = {};\n",
+ "\n",
+ " root._bokeh_onload_callbacks.push(callback);\n",
+ "\n",
+ " if (root._bokeh_is_loading > 0) {\n",
+ " // Don't load bokeh if it is still initializing\n",
+ " console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
+ " return null;\n",
+ " } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n",
+ " // There is nothing to load\n",
+ " run_callbacks();\n",
+ " return null;\n",
+ " }\n",
+ "\n",
+ " function on_load() {\n",
+ " root._bokeh_is_loading--;\n",
+ " if (root._bokeh_is_loading === 0) {\n",
+ " console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
+ " run_callbacks()\n",
+ " }\n",
+ " }\n",
+ " window._bokeh_on_load = on_load\n",
+ "\n",
+ " function on_error(e) {\n",
+ " const src_el = e.srcElement\n",
+ " console.error(\"failed to load \" + (src_el.href || src_el.src));\n",
+ " }\n",
+ "\n",
+ " const skip = [];\n",
+ " if (window.requirejs) {\n",
+ " window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n",
+ " root._bokeh_is_loading = css_urls.length + 0;\n",
+ " } else {\n",
+ " root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n",
+ " }\n",
+ "\n",
+ " const existing_stylesheets = []\n",
+ " const links = document.getElementsByTagName('link')\n",
+ " for (let i = 0; i < links.length; i++) {\n",
+ " const link = links[i]\n",
+ " if (link.href != null) {\n",
+ " existing_stylesheets.push(link.href)\n",
+ " }\n",
+ " }\n",
+ " for (let i = 0; i < css_urls.length; i++) {\n",
+ " const url = css_urls[i];\n",
+ " const escaped = encodeURI(url)\n",
+ " if (existing_stylesheets.indexOf(escaped) !== -1) {\n",
+ " on_load()\n",
+ " continue;\n",
+ " }\n",
+ " const element = document.createElement(\"link\");\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.rel = \"stylesheet\";\n",
+ " element.type = \"text/css\";\n",
+ " element.href = url;\n",
+ " console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
+ " document.body.appendChild(element);\n",
+ " } var existing_scripts = []\n",
+ " const scripts = document.getElementsByTagName('script')\n",
+ " for (let i = 0; i < scripts.length; i++) {\n",
+ " var script = scripts[i]\n",
+ " if (script.src != null) {\n",
+ " existing_scripts.push(script.src)\n",
+ " }\n",
+ " }\n",
+ " for (let i = 0; i < js_urls.length; i++) {\n",
+ " const url = js_urls[i];\n",
+ " const escaped = encodeURI(url)\n",
+ " if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n",
+ " if (!window.requirejs) {\n",
+ " on_load();\n",
+ " }\n",
+ " continue;\n",
+ " }\n",
+ " const element = document.createElement('script');\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.src = url;\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " for (let i = 0; i < js_modules.length; i++) {\n",
+ " const url = js_modules[i];\n",
+ " const escaped = encodeURI(url)\n",
+ " if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n",
+ " if (!window.requirejs) {\n",
+ " on_load();\n",
+ " }\n",
+ " continue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.src = url;\n",
+ " element.type = \"module\";\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " for (const name in js_exports) {\n",
+ " const url = js_exports[name];\n",
+ " const escaped = encodeURI(url)\n",
+ " if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n",
+ " if (!window.requirejs) {\n",
+ " on_load();\n",
+ " }\n",
+ " continue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.type = \"module\";\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " element.textContent = `\n",
+ " import ${name} from \"${url}\"\n",
+ " window.${name} = ${name}\n",
+ " window._bokeh_on_load()\n",
+ " `\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " if (!js_urls.length && !js_modules.length) {\n",
+ " on_load()\n",
+ " }\n",
+ " };\n",
+ "\n",
+ " function inject_raw_css(css) {\n",
+ " const element = document.createElement(\"style\");\n",
+ " element.appendChild(document.createTextNode(css));\n",
+ " document.body.appendChild(element);\n",
+ " }\n",
+ "\n",
+ " const js_urls = [\"https://cdn.holoviz.org/panel/1.6.1/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n",
+ " const js_modules = [];\n",
+ " const js_exports = {};\n",
+ " const css_urls = [];\n",
+ " const inline_js = [ function(Bokeh) {\n",
+ " Bokeh.set_log_level(\"info\");\n",
+ " },\n",
+ "function(Bokeh) {} // ensure no trailing comma for IE\n",
+ " ];\n",
+ "\n",
+ " function run_inline_js() {\n",
+ " if ((root.Bokeh !== undefined) || (force === true)) {\n",
+ " for (let i = 0; i < inline_js.length; i++) {\n",
+ " try {\n",
+ " inline_js[i].call(root, root.Bokeh);\n",
+ " } catch(e) {\n",
+ " if (!reloading) {\n",
+ " throw e;\n",
+ " }\n",
+ " }\n",
+ " }\n",
+ " // Cache old bokeh versions\n",
+ " if (Bokeh != undefined && !reloading) {\n",
+ " var NewBokeh = root.Bokeh;\n",
+ " if (Bokeh.versions === undefined) {\n",
+ " Bokeh.versions = new Map();\n",
+ " }\n",
+ " if (NewBokeh.version !== Bokeh.version) {\n",
+ " Bokeh.versions.set(NewBokeh.version, NewBokeh)\n",
+ " }\n",
+ " root.Bokeh = Bokeh;\n",
+ " }\n",
+ " } else if (Date.now() < root._bokeh_timeout) {\n",
+ " setTimeout(run_inline_js, 100);\n",
+ " } else if (!root._bokeh_failed_load) {\n",
+ " console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
+ " root._bokeh_failed_load = true;\n",
+ " }\n",
+ " root._bokeh_is_initializing = false\n",
+ " }\n",
+ "\n",
+ " function load_or_wait() {\n",
+ " // Implement a backoff loop that tries to ensure we do not load multiple\n",
+ " // versions of Bokeh and its dependencies at the same time.\n",
+ " // In recent versions we use the root._bokeh_is_initializing flag\n",
+ " // to determine whether there is an ongoing attempt to initialize\n",
+ " // bokeh, however for backward compatibility we also try to ensure\n",
+ " // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n",
+ " // before older versions are fully initialized.\n",
+ " if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n",
+ " // If the timeout and bokeh was not successfully loaded we reset\n",
+ " // everything and try loading again\n",
+ " root._bokeh_timeout = Date.now() + 5000;\n",
+ " root._bokeh_is_initializing = false;\n",
+ " root._bokeh_onload_callbacks = undefined;\n",
+ " root._bokeh_is_loading = 0\n",
+ " console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n",
+ " load_or_wait();\n",
+ " } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n",
+ " setTimeout(load_or_wait, 100);\n",
+ " } else {\n",
+ " root._bokeh_is_initializing = true\n",
+ " root._bokeh_onload_callbacks = []\n",
+ " const bokeh_loaded = root.Bokeh != null && (root.Bokeh.version === py_version || (root.Bokeh.versions !== undefined && root.Bokeh.versions.has(py_version)));\n",
+ " if (!reloading && !bokeh_loaded) {\n",
+ " if (root.Bokeh) {\n",
+ " root.Bokeh = undefined;\n",
+ " }\n",
+ " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
+ " }\n",
+ " load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n",
+ " console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
+ " run_inline_js();\n",
+ " });\n",
+ " }\n",
+ " }\n",
+ " // Give older versions of the autoload script a head-start to ensure\n",
+ " // they initialize before we start loading newer version.\n",
+ " setTimeout(load_or_wait, 100)\n",
+ "}(window));"
+ ],
+ "application/vnd.holoviews_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = false;\n const py_version = '3.6.3'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = true;\n const Bokeh = root.Bokeh;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n // Don't load bokeh if it is still initializing\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n // There is nothing to load\n run_callbacks();\n return null;\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error(e) {\n const src_el = e.srcElement\n console.error(\"failed to load \" + (src_el.href || src_el.src));\n }\n\n const skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n root._bokeh_is_loading = css_urls.length + 0;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n const existing_stylesheets = []\n const links = document.getElementsByTagName('link')\n for (let i = 0; i < links.length; i++) {\n const link = links[i]\n if (link.href != null) {\n existing_stylesheets.push(link.href)\n }\n }\n for (let i = 0; i < css_urls.length; i++) {\n const url = css_urls[i];\n const escaped = encodeURI(url)\n if (existing_stylesheets.indexOf(escaped) !== -1) {\n on_load()\n continue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } var existing_scripts = []\n const scripts = document.getElementsByTagName('script')\n for (let i = 0; i < scripts.length; i++) {\n var script = scripts[i]\n if (script.src != null) {\n existing_scripts.push(script.src)\n }\n }\n for (let i = 0; i < js_urls.length; i++) {\n const url = js_urls[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n const element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (let i = 0; i < js_modules.length; i++) {\n const url = js_modules[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n const url = js_exports[name];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onerror = on_error;\n element.async = false;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n element.textContent = `\n import ${name} from \"${url}\"\n window.${name} = ${name}\n window._bokeh_on_load()\n `\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.holoviz.org/panel/1.6.1/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n const js_modules = [];\n const js_exports = {};\n const css_urls = [];\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (let i = 0; i < inline_js.length; i++) {\n try {\n inline_js[i].call(root, root.Bokeh);\n } catch(e) {\n if (!reloading) {\n throw e;\n }\n }\n }\n // Cache old bokeh versions\n if (Bokeh != undefined && !reloading) {\n var NewBokeh = root.Bokeh;\n if (Bokeh.versions === undefined) {\n Bokeh.versions = new Map();\n }\n if (NewBokeh.version !== Bokeh.version) {\n Bokeh.versions.set(NewBokeh.version, NewBokeh)\n }\n root.Bokeh = Bokeh;\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n // If the timeout and bokeh was not successfully loaded we reset\n // everything and try loading again\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n root._bokeh_is_loading = 0\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true\n root._bokeh_onload_callbacks = []\n const bokeh_loaded = root.Bokeh != null && (root.Bokeh.version === py_version || (root.Bokeh.versions !== undefined && root.Bokeh.versions.has(py_version)));\n if (!reloading && !bokeh_loaded) {\n if (root.Bokeh) {\n root.Bokeh = undefined;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));"
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/javascript": [
+ "\n",
+ "if ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n",
+ " window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n",
+ "}\n",
+ "\n",
+ "\n",
+ " function JupyterCommManager() {\n",
+ " }\n",
+ "\n",
+ " JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n",
+ " if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
+ " var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
+ " comm_manager.register_target(comm_id, function(comm) {\n",
+ " comm.on_msg(msg_handler);\n",
+ " });\n",
+ " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
+ " window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n",
+ " comm.onMsg = msg_handler;\n",
+ " });\n",
+ " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
+ " google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n",
+ " var messages = comm.messages[Symbol.asyncIterator]();\n",
+ " function processIteratorResult(result) {\n",
+ " var message = result.value;\n",
+ " console.log(message)\n",
+ " var content = {data: message.data, comm_id};\n",
+ " var buffers = []\n",
+ " for (var buffer of message.buffers || []) {\n",
+ " buffers.push(new DataView(buffer))\n",
+ " }\n",
+ " var metadata = message.metadata || {};\n",
+ " var msg = {content, buffers, metadata}\n",
+ " msg_handler(msg);\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " })\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n",
+ " if (comm_id in window.PyViz.comms) {\n",
+ " return window.PyViz.comms[comm_id];\n",
+ " } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
+ " var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
+ " var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n",
+ " if (msg_handler) {\n",
+ " comm.on_msg(msg_handler);\n",
+ " }\n",
+ " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
+ " var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n",
+ " comm.open();\n",
+ " if (msg_handler) {\n",
+ " comm.onMsg = msg_handler;\n",
+ " }\n",
+ " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
+ " var comm_promise = google.colab.kernel.comms.open(comm_id)\n",
+ " comm_promise.then((comm) => {\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " if (msg_handler) {\n",
+ " var messages = comm.messages[Symbol.asyncIterator]();\n",
+ " function processIteratorResult(result) {\n",
+ " var message = result.value;\n",
+ " var content = {data: message.data};\n",
+ " var metadata = message.metadata || {comm_id};\n",
+ " var msg = {content, metadata}\n",
+ " msg_handler(msg);\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " }) \n",
+ " var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n",
+ " return comm_promise.then((comm) => {\n",
+ " comm.send(data, metadata, buffers, disposeOnDone);\n",
+ " });\n",
+ " };\n",
+ " var comm = {\n",
+ " send: sendClosure\n",
+ " };\n",
+ " }\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " return comm;\n",
+ " }\n",
+ " window.PyViz.comm_manager = new JupyterCommManager();\n",
+ " \n",
+ "\n",
+ "\n",
+ "var JS_MIME_TYPE = 'application/javascript';\n",
+ "var HTML_MIME_TYPE = 'text/html';\n",
+ "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n",
+ "var CLASS_NAME = 'output';\n",
+ "\n",
+ "/**\n",
+ " * Render data to the DOM node\n",
+ " */\n",
+ "function render(props, node) {\n",
+ " var div = document.createElement(\"div\");\n",
+ " var script = document.createElement(\"script\");\n",
+ " node.appendChild(div);\n",
+ " node.appendChild(script);\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when a new output is added\n",
+ " */\n",
+ "function handle_add_output(event, handle) {\n",
+ " var output_area = handle.output_area;\n",
+ " var output = handle.output;\n",
+ " if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
+ " return\n",
+ " }\n",
+ " var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
+ " var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
+ " if (id !== undefined) {\n",
+ " var nchildren = toinsert.length;\n",
+ " var html_node = toinsert[nchildren-1].children[0];\n",
+ " html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var scripts = [];\n",
+ " var nodelist = html_node.querySelectorAll(\"script\");\n",
+ " for (var i in nodelist) {\n",
+ " if (nodelist.hasOwnProperty(i)) {\n",
+ " scripts.push(nodelist[i])\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " scripts.forEach( function (oldScript) {\n",
+ " var newScript = document.createElement(\"script\");\n",
+ " var attrs = [];\n",
+ " var nodemap = oldScript.attributes;\n",
+ " for (var j in nodemap) {\n",
+ " if (nodemap.hasOwnProperty(j)) {\n",
+ " attrs.push(nodemap[j])\n",
+ " }\n",
+ " }\n",
+ " attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n",
+ " newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
+ " oldScript.parentNode.replaceChild(newScript, oldScript);\n",
+ " });\n",
+ " if (JS_MIME_TYPE in output.data) {\n",
+ " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
+ " }\n",
+ " output_area._hv_plot_id = id;\n",
+ " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
+ " window.PyViz.plot_index[id] = Bokeh.index[id];\n",
+ " } else {\n",
+ " window.PyViz.plot_index[id] = null;\n",
+ " }\n",
+ " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
+ " var bk_div = document.createElement(\"div\");\n",
+ " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var script_attrs = bk_div.children[0].attributes;\n",
+ " for (var i = 0; i < script_attrs.length; i++) {\n",
+ " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
+ " }\n",
+ " // store reference to server id on output_area\n",
+ " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when an output is cleared or removed\n",
+ " */\n",
+ "function handle_clear_output(event, handle) {\n",
+ " var id = handle.cell.output_area._hv_plot_id;\n",
+ " var server_id = handle.cell.output_area._bokeh_server_id;\n",
+ " if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
+ " var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
+ " if (server_id !== null) {\n",
+ " comm.send({event_type: 'server_delete', 'id': server_id});\n",
+ " return;\n",
+ " } else if (comm !== null) {\n",
+ " comm.send({event_type: 'delete', 'id': id});\n",
+ " }\n",
+ " delete PyViz.plot_index[id];\n",
+ " if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
+ " var doc = window.Bokeh.index[id].model.document\n",
+ " doc.clear();\n",
+ " const i = window.Bokeh.documents.indexOf(doc);\n",
+ " if (i > -1) {\n",
+ " window.Bokeh.documents.splice(i, 1);\n",
+ " }\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle kernel restart event\n",
+ " */\n",
+ "function handle_kernel_cleanup(event, handle) {\n",
+ " delete PyViz.comms[\"hv-extension-comm\"];\n",
+ " window.PyViz.plot_index = {}\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle update_display_data messages\n",
+ " */\n",
+ "function handle_update_output(event, handle) {\n",
+ " handle_clear_output(event, {cell: {output_area: handle.output_area}})\n",
+ " handle_add_output(event, handle)\n",
+ "}\n",
+ "\n",
+ "function register_renderer(events, OutputArea) {\n",
+ " function append_mime(data, metadata, element) {\n",
+ " // create a DOM node to render to\n",
+ " var toinsert = this.create_output_subarea(\n",
+ " metadata,\n",
+ " CLASS_NAME,\n",
+ " EXEC_MIME_TYPE\n",
+ " );\n",
+ " this.keyboard_manager.register_events(toinsert);\n",
+ " // Render to node\n",
+ " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
+ " render(props, toinsert[0]);\n",
+ " element.append(toinsert);\n",
+ " return toinsert\n",
+ " }\n",
+ "\n",
+ " events.on('output_added.OutputArea', handle_add_output);\n",
+ " events.on('output_updated.OutputArea', handle_update_output);\n",
+ " events.on('clear_output.CodeCell', handle_clear_output);\n",
+ " events.on('delete.Cell', handle_clear_output);\n",
+ " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n",
+ "\n",
+ " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
+ " safe: true,\n",
+ " index: 0\n",
+ " });\n",
+ "}\n",
+ "\n",
+ "if (window.Jupyter !== undefined) {\n",
+ " try {\n",
+ " var events = require('base/js/events');\n",
+ " var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
+ " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
+ " register_renderer(events, OutputArea);\n",
+ " }\n",
+ " } catch(err) {\n",
+ " }\n",
+ "}\n"
+ ],
+ "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } else {\n window.PyViz.plot_index[id] = null;\n }\n } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n var bk_div = document.createElement(\"div\");\n bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n var script_attrs = bk_div.children[0].attributes;\n for (var i = 0; i < script_attrs.length; i++) {\n toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n }\n // store reference to server id on output_area\n output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n var id = handle.cell.output_area._hv_plot_id;\n var server_id = handle.cell.output_area._bokeh_server_id;\n if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n"
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "text/html": [
+ ""
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/javascript": [
+ "(function(root) {\n",
+ " function now() {\n",
+ " return new Date();\n",
+ " }\n",
+ "\n",
+ " const force = false;\n",
+ " const py_version = '3.6.3'.replace('rc', '-rc.').replace('.dev', '-dev.');\n",
+ " const reloading = true;\n",
+ " const Bokeh = root.Bokeh;\n",
+ "\n",
+ " // Set a timeout for this load but only if we are not already initializing\n",
+ " if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n",
+ " root._bokeh_timeout = Date.now() + 5000;\n",
+ " root._bokeh_failed_load = false;\n",
+ " }\n",
+ "\n",
+ " function run_callbacks() {\n",
+ " try {\n",
+ " root._bokeh_onload_callbacks.forEach(function(callback) {\n",
+ " if (callback != null)\n",
+ " callback();\n",
+ " });\n",
+ " } finally {\n",
+ " delete root._bokeh_onload_callbacks;\n",
+ " }\n",
+ " console.debug(\"Bokeh: all callbacks have finished\");\n",
+ " }\n",
+ "\n",
+ " function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n",
+ " if (css_urls == null) css_urls = [];\n",
+ " if (js_urls == null) js_urls = [];\n",
+ " if (js_modules == null) js_modules = [];\n",
+ " if (js_exports == null) js_exports = {};\n",
+ "\n",
+ " root._bokeh_onload_callbacks.push(callback);\n",
+ "\n",
+ " if (root._bokeh_is_loading > 0) {\n",
+ " // Don't load bokeh if it is still initializing\n",
+ " console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
+ " return null;\n",
+ " } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n",
+ " // There is nothing to load\n",
+ " run_callbacks();\n",
+ " return null;\n",
+ " }\n",
+ "\n",
+ " function on_load() {\n",
+ " root._bokeh_is_loading--;\n",
+ " if (root._bokeh_is_loading === 0) {\n",
+ " console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
+ " run_callbacks()\n",
+ " }\n",
+ " }\n",
+ " window._bokeh_on_load = on_load\n",
+ "\n",
+ " function on_error(e) {\n",
+ " const src_el = e.srcElement\n",
+ " console.error(\"failed to load \" + (src_el.href || src_el.src));\n",
+ " }\n",
+ "\n",
+ " const skip = [];\n",
+ " if (window.requirejs) {\n",
+ " window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n",
+ " root._bokeh_is_loading = css_urls.length + 0;\n",
+ " } else {\n",
+ " root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n",
+ " }\n",
+ "\n",
+ " const existing_stylesheets = []\n",
+ " const links = document.getElementsByTagName('link')\n",
+ " for (let i = 0; i < links.length; i++) {\n",
+ " const link = links[i]\n",
+ " if (link.href != null) {\n",
+ " existing_stylesheets.push(link.href)\n",
+ " }\n",
+ " }\n",
+ " for (let i = 0; i < css_urls.length; i++) {\n",
+ " const url = css_urls[i];\n",
+ " const escaped = encodeURI(url)\n",
+ " if (existing_stylesheets.indexOf(escaped) !== -1) {\n",
+ " on_load()\n",
+ " continue;\n",
+ " }\n",
+ " const element = document.createElement(\"link\");\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.rel = \"stylesheet\";\n",
+ " element.type = \"text/css\";\n",
+ " element.href = url;\n",
+ " console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
+ " document.body.appendChild(element);\n",
+ " } var existing_scripts = []\n",
+ " const scripts = document.getElementsByTagName('script')\n",
+ " for (let i = 0; i < scripts.length; i++) {\n",
+ " var script = scripts[i]\n",
+ " if (script.src != null) {\n",
+ " existing_scripts.push(script.src)\n",
+ " }\n",
+ " }\n",
+ " for (let i = 0; i < js_urls.length; i++) {\n",
+ " const url = js_urls[i];\n",
+ " const escaped = encodeURI(url)\n",
+ " if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n",
+ " if (!window.requirejs) {\n",
+ " on_load();\n",
+ " }\n",
+ " continue;\n",
+ " }\n",
+ " const element = document.createElement('script');\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.src = url;\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " for (let i = 0; i < js_modules.length; i++) {\n",
+ " const url = js_modules[i];\n",
+ " const escaped = encodeURI(url)\n",
+ " if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n",
+ " if (!window.requirejs) {\n",
+ " on_load();\n",
+ " }\n",
+ " continue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onload = on_load;\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.src = url;\n",
+ " element.type = \"module\";\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " for (const name in js_exports) {\n",
+ " const url = js_exports[name];\n",
+ " const escaped = encodeURI(url)\n",
+ " if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n",
+ " if (!window.requirejs) {\n",
+ " on_load();\n",
+ " }\n",
+ " continue;\n",
+ " }\n",
+ " var element = document.createElement('script');\n",
+ " element.onerror = on_error;\n",
+ " element.async = false;\n",
+ " element.type = \"module\";\n",
+ " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " element.textContent = `\n",
+ " import ${name} from \"${url}\"\n",
+ " window.${name} = ${name}\n",
+ " window._bokeh_on_load()\n",
+ " `\n",
+ " document.head.appendChild(element);\n",
+ " }\n",
+ " if (!js_urls.length && !js_modules.length) {\n",
+ " on_load()\n",
+ " }\n",
+ " };\n",
+ "\n",
+ " function inject_raw_css(css) {\n",
+ " const element = document.createElement(\"style\");\n",
+ " element.appendChild(document.createTextNode(css));\n",
+ " document.body.appendChild(element);\n",
+ " }\n",
+ "\n",
+ " const js_urls = [\"https://cdn.holoviz.org/panel/1.6.1/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n",
+ " const js_modules = [];\n",
+ " const js_exports = {};\n",
+ " const css_urls = [];\n",
+ " const inline_js = [ function(Bokeh) {\n",
+ " Bokeh.set_log_level(\"info\");\n",
+ " },\n",
+ "function(Bokeh) {} // ensure no trailing comma for IE\n",
+ " ];\n",
+ "\n",
+ " function run_inline_js() {\n",
+ " if ((root.Bokeh !== undefined) || (force === true)) {\n",
+ " for (let i = 0; i < inline_js.length; i++) {\n",
+ " try {\n",
+ " inline_js[i].call(root, root.Bokeh);\n",
+ " } catch(e) {\n",
+ " if (!reloading) {\n",
+ " throw e;\n",
+ " }\n",
+ " }\n",
+ " }\n",
+ " // Cache old bokeh versions\n",
+ " if (Bokeh != undefined && !reloading) {\n",
+ " var NewBokeh = root.Bokeh;\n",
+ " if (Bokeh.versions === undefined) {\n",
+ " Bokeh.versions = new Map();\n",
+ " }\n",
+ " if (NewBokeh.version !== Bokeh.version) {\n",
+ " Bokeh.versions.set(NewBokeh.version, NewBokeh)\n",
+ " }\n",
+ " root.Bokeh = Bokeh;\n",
+ " }\n",
+ " } else if (Date.now() < root._bokeh_timeout) {\n",
+ " setTimeout(run_inline_js, 100);\n",
+ " } else if (!root._bokeh_failed_load) {\n",
+ " console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
+ " root._bokeh_failed_load = true;\n",
+ " }\n",
+ " root._bokeh_is_initializing = false\n",
+ " }\n",
+ "\n",
+ " function load_or_wait() {\n",
+ " // Implement a backoff loop that tries to ensure we do not load multiple\n",
+ " // versions of Bokeh and its dependencies at the same time.\n",
+ " // In recent versions we use the root._bokeh_is_initializing flag\n",
+ " // to determine whether there is an ongoing attempt to initialize\n",
+ " // bokeh, however for backward compatibility we also try to ensure\n",
+ " // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n",
+ " // before older versions are fully initialized.\n",
+ " if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n",
+ " // If the timeout and bokeh was not successfully loaded we reset\n",
+ " // everything and try loading again\n",
+ " root._bokeh_timeout = Date.now() + 5000;\n",
+ " root._bokeh_is_initializing = false;\n",
+ " root._bokeh_onload_callbacks = undefined;\n",
+ " root._bokeh_is_loading = 0\n",
+ " console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n",
+ " load_or_wait();\n",
+ " } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n",
+ " setTimeout(load_or_wait, 100);\n",
+ " } else {\n",
+ " root._bokeh_is_initializing = true\n",
+ " root._bokeh_onload_callbacks = []\n",
+ " const bokeh_loaded = root.Bokeh != null && (root.Bokeh.version === py_version || (root.Bokeh.versions !== undefined && root.Bokeh.versions.has(py_version)));\n",
+ " if (!reloading && !bokeh_loaded) {\n",
+ " if (root.Bokeh) {\n",
+ " root.Bokeh = undefined;\n",
+ " }\n",
+ " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
+ " }\n",
+ " load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n",
+ " console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
+ " run_inline_js();\n",
+ " });\n",
+ " }\n",
+ " }\n",
+ " // Give older versions of the autoload script a head-start to ensure\n",
+ " // they initialize before we start loading newer version.\n",
+ " setTimeout(load_or_wait, 100)\n",
+ "}(window));"
+ ],
+ "application/vnd.holoviews_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = false;\n const py_version = '3.6.3'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = true;\n const Bokeh = root.Bokeh;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n // Don't load bokeh if it is still initializing\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n // There is nothing to load\n run_callbacks();\n return null;\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error(e) {\n const src_el = e.srcElement\n console.error(\"failed to load \" + (src_el.href || src_el.src));\n }\n\n const skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n root._bokeh_is_loading = css_urls.length + 0;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n const existing_stylesheets = []\n const links = document.getElementsByTagName('link')\n for (let i = 0; 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+ "output_type": "display_data"
+ },
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+ "}\n",
+ "\n",
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+ " }\n",
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+ " if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
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+ " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
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+ " } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
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+ " comm_promise.then((comm) => {\n",
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+ " msg_handler(msg);\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " return messages.next().then(processIteratorResult);\n",
+ " }\n",
+ " }) \n",
+ " var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n",
+ " return comm_promise.then((comm) => {\n",
+ " comm.send(data, metadata, buffers, disposeOnDone);\n",
+ " });\n",
+ " };\n",
+ " var comm = {\n",
+ " send: sendClosure\n",
+ " };\n",
+ " }\n",
+ " window.PyViz.comms[comm_id] = comm;\n",
+ " return comm;\n",
+ " }\n",
+ " window.PyViz.comm_manager = new JupyterCommManager();\n",
+ " \n",
+ "\n",
+ "\n",
+ "var JS_MIME_TYPE = 'application/javascript';\n",
+ "var HTML_MIME_TYPE = 'text/html';\n",
+ "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n",
+ "var CLASS_NAME = 'output';\n",
+ "\n",
+ "/**\n",
+ " * Render data to the DOM node\n",
+ " */\n",
+ "function render(props, node) {\n",
+ " var div = document.createElement(\"div\");\n",
+ " var script = document.createElement(\"script\");\n",
+ " node.appendChild(div);\n",
+ " node.appendChild(script);\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when a new output is added\n",
+ " */\n",
+ "function handle_add_output(event, handle) {\n",
+ " var output_area = handle.output_area;\n",
+ " var output = handle.output;\n",
+ " if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
+ " return\n",
+ " }\n",
+ " var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
+ " var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
+ " if (id !== undefined) {\n",
+ " var nchildren = toinsert.length;\n",
+ " var html_node = toinsert[nchildren-1].children[0];\n",
+ " html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var scripts = [];\n",
+ " var nodelist = html_node.querySelectorAll(\"script\");\n",
+ " for (var i in nodelist) {\n",
+ " if (nodelist.hasOwnProperty(i)) {\n",
+ " scripts.push(nodelist[i])\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " scripts.forEach( function (oldScript) {\n",
+ " var newScript = document.createElement(\"script\");\n",
+ " var attrs = [];\n",
+ " var nodemap = oldScript.attributes;\n",
+ " for (var j in nodemap) {\n",
+ " if (nodemap.hasOwnProperty(j)) {\n",
+ " attrs.push(nodemap[j])\n",
+ " }\n",
+ " }\n",
+ " attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n",
+ " newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
+ " oldScript.parentNode.replaceChild(newScript, oldScript);\n",
+ " });\n",
+ " if (JS_MIME_TYPE in output.data) {\n",
+ " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
+ " }\n",
+ " output_area._hv_plot_id = id;\n",
+ " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
+ " window.PyViz.plot_index[id] = Bokeh.index[id];\n",
+ " } else {\n",
+ " window.PyViz.plot_index[id] = null;\n",
+ " }\n",
+ " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
+ " var bk_div = document.createElement(\"div\");\n",
+ " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var script_attrs = bk_div.children[0].attributes;\n",
+ " for (var i = 0; i < script_attrs.length; i++) {\n",
+ " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
+ " }\n",
+ " // store reference to server id on output_area\n",
+ " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle when an output is cleared or removed\n",
+ " */\n",
+ "function handle_clear_output(event, handle) {\n",
+ " var id = handle.cell.output_area._hv_plot_id;\n",
+ " var server_id = handle.cell.output_area._bokeh_server_id;\n",
+ " if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
+ " var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
+ " if (server_id !== null) {\n",
+ " comm.send({event_type: 'server_delete', 'id': server_id});\n",
+ " return;\n",
+ " } else if (comm !== null) {\n",
+ " comm.send({event_type: 'delete', 'id': id});\n",
+ " }\n",
+ " delete PyViz.plot_index[id];\n",
+ " if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
+ " var doc = window.Bokeh.index[id].model.document\n",
+ " doc.clear();\n",
+ " const i = window.Bokeh.documents.indexOf(doc);\n",
+ " if (i > -1) {\n",
+ " window.Bokeh.documents.splice(i, 1);\n",
+ " }\n",
+ " }\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle kernel restart event\n",
+ " */\n",
+ "function handle_kernel_cleanup(event, handle) {\n",
+ " delete PyViz.comms[\"hv-extension-comm\"];\n",
+ " window.PyViz.plot_index = {}\n",
+ "}\n",
+ "\n",
+ "/**\n",
+ " * Handle update_display_data messages\n",
+ " */\n",
+ "function handle_update_output(event, handle) {\n",
+ " handle_clear_output(event, {cell: {output_area: handle.output_area}})\n",
+ " handle_add_output(event, handle)\n",
+ "}\n",
+ "\n",
+ "function register_renderer(events, OutputArea) {\n",
+ " function append_mime(data, metadata, element) {\n",
+ " // create a DOM node to render to\n",
+ " var toinsert = this.create_output_subarea(\n",
+ " metadata,\n",
+ " CLASS_NAME,\n",
+ " EXEC_MIME_TYPE\n",
+ " );\n",
+ " this.keyboard_manager.register_events(toinsert);\n",
+ " // Render to node\n",
+ " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
+ " render(props, toinsert[0]);\n",
+ " element.append(toinsert);\n",
+ " return toinsert\n",
+ " }\n",
+ "\n",
+ " events.on('output_added.OutputArea', handle_add_output);\n",
+ " events.on('output_updated.OutputArea', handle_update_output);\n",
+ " events.on('clear_output.CodeCell', handle_clear_output);\n",
+ " events.on('delete.Cell', handle_clear_output);\n",
+ " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n",
+ "\n",
+ " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
+ " safe: true,\n",
+ " index: 0\n",
+ " });\n",
+ "}\n",
+ "\n",
+ "if (window.Jupyter !== undefined) {\n",
+ " try {\n",
+ " var events = require('base/js/events');\n",
+ " var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
+ " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
+ " register_renderer(events, OutputArea);\n",
+ " }\n",
+ " } catch(err) {\n",
+ " }\n",
+ "}\n"
+ ],
+ "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } 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+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "import argparse, time, os\n",
+ "import random\n",
+ "\n",
+ "from tqdm import tqdm\n",
+ "import copy, math\n",
+ "import numpy as np\n",
+ "import matplotlib.pyplot as plt\n",
+ "import pandas as pd\n",
+ "import geopandas as gpd\n",
+ "from pyproj import Proj, Transformer, Geod\n",
+ "import xarray\n",
+ "import xrspatial.slope\n",
+ "from bokeh.models import PrintfTickFormatter, FixedTicker\n",
+ "import datashader as ds\n",
+ "import holoviews as hv\n",
+ "from holoviews import opts\n",
+ "from holoviews.operation.datashader import datashade, rasterize, inspect_points\n",
+ "import hvplot.xarray\n",
+ "import hvplot.pandas\n",
+ "import rioxarray\n",
+ "\n",
+ "hv.extension('bokeh')"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "id": "d8256c70-e154-4e28-a6b4-3687bf50ed90",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "from bokeh.themes.theme import Theme\n",
+ "# Custom Bokeh theme for improved colorbar title styling\n",
+ "theme = Theme(json={\n",
+ " 'attrs': {\n",
+ " 'Title': {'align': 'center', 'text_font_size': '15px'}, # Larger and centered title\n",
+ " 'Axis': {'axis_label_text_font_style': 'normal'}, # No italic labels\n",
+ " 'Legend': {'title_text_font_style': 'normal'},\n",
+ " 'ColorBar': {'title_text_font_size': '16pt', # Larger colorbar title\n",
+ " 'title_text_font_style': 'normal',\n",
+ " 'major_label_text_font_size': '13pt'}\n",
+ " }\n",
+ "})\n",
+ "\n",
+ "hv.renderer('bokeh').theme = theme"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "id": "64db87ff-0a69-4515-a06a-385e7a95b5a7",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "We are dealing with 151 files from BedMap\n"
+ ]
+ }
+ ],
+ "source": [
+ "bedmap_folder = f\"/media/maffe/nvme/polar_ice_thickness_data/bedmap\"\n",
+ "\n",
+ "# Find all .csv files in the directory\n",
+ "files_bedmap = [\n",
+ " os.path.join(root, file)\n",
+ " for root, _, files in os.walk(bedmap_folder)\n",
+ " for file in files if file.endswith(\".csv\")\n",
+ "]\n",
+ "\n",
+ "# Process each file\n",
+ "total_files = len(files_bedmap)\n",
+ "print(f\"We are dealing with {total_files} files from BedMap\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "id": "90c36e12-75eb-47a5-8cb5-4487fc3d0cb2",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# Columns to check for. Also let's rename the column names to values on the right\n",
+ "required_columns_bedmap = {\n",
+ " 'longitude (degree_east)': 'LON',\n",
+ " 'latitude (degree_north)': 'LAT',\n",
+ " 'date': 'date',\n",
+ " 'surface_altitude (m)': 'surface_altitude (m)',\n",
+ " 'land_ice_thickness (m)': 'THICK',\n",
+ " 'bedrock_altitude (m)': 'bedrock_altitude (m)'\n",
+ "}"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "id": "be631f5f-b25d-4804-ab3f-8f46d8d7164e",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "100%|█████████████████████████████████████████| 151/151 [01:15<00:00, 2.00it/s]\n"
+ ]
+ }
+ ],
+ "source": [
+ "# List to store dataframes\n",
+ "bedmap_list_csv = []\n",
+ " \n",
+ "for i, file in tqdm(enumerate(files_bedmap), total=total_files, leave=True):\n",
+ "\n",
+ " try: \n",
+ " # Read the CSV file, skipping the header\n",
+ " df_file_csv = pd.read_csv(file, skiprows=18, low_memory=False, dtype={'date': 'string'})\n",
+ "\n",
+ " # Check if required columns exist\n",
+ " missing_columns = [col for col in required_columns_bedmap.keys() if col not in df_file_csv.columns]\n",
+ " if missing_columns:\n",
+ " raise ValueError(f\"Missing columns: {missing_columns}\")\n",
+ "\n",
+ " # Select only the required columns\n",
+ " #df_file_csv = df_file_csv[required_columns_bedmap]\n",
+ " df_file_csv = df_file_csv[required_columns_bedmap.keys()].rename(columns=required_columns_bedmap)\n",
+ " \n",
+ " # Append to the list of dataframes\n",
+ " bedmap_list_csv.append(df_file_csv)\n",
+ "\n",
+ " except Exception as e:\n",
+ " print(f\"Error processing file '{file}': {e}\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "id": "c5c23f97-bbe0-44f8-bec0-8c9365e09d74",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Original BedMap no. points: 95892117.\n"
+ ]
+ }
+ ],
+ "source": [
+ "# Concatenate all dataframes into one\n",
+ "combined_bedmap_df = pd.concat(bedmap_list_csv, axis=0, ignore_index=True)\n",
+ "print(f\"Original BedMap no. points: {len(combined_bedmap_df)}.\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "id": "1691c896-0f29-41e0-a851-bfd44d938547",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "no. points: 81087281.\n"
+ ]
+ }
+ ],
+ "source": [
+ "# Data cleaning\n",
+ "\n",
+ "# NOTE: this could be further refined. In particular, some crossing tracks sometimes appear not consistent\n",
+ "\n",
+ "# 1) remove rows where THICK is -9999\n",
+ "combined_bedmap_df = combined_bedmap_df[~combined_bedmap_df[['THICK']].isin([-9999]).any(axis=1)\n",
+ "]\n",
+ "# 2) Remove too small ice thickness data\n",
+ "combined_bedmap_df = combined_bedmap_df[combined_bedmap_df['THICK'] > 0.5]\n",
+ "print(f\"no. points: {len(combined_bedmap_df)}.\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 8,
+ "id": "486aaf09-5772-42b6-96a4-ae63b66d0598",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " LON LAT date surface_altitude (m) THICK \\\n",
+ "0 76.889142 -69.876749 -9999 -9999.0 1046.6 \n",
+ "1 76.893603 -69.876762 -9999 -9999.0 1058.5 \n",
+ "2 76.899026 -69.876753 -9999 -9999.0 1061.1 \n",
+ "3 76.904100 -69.876424 -9999 -9999.0 1063.7 \n",
+ "4 76.909194 -69.876374 -9999 -9999.0 1069.8 \n",
+ "\n",
+ " bedrock_altitude (m) \n",
+ "0 -9999.0 \n",
+ "1 -9999.0 \n",
+ "2 -9999.0 \n",
+ "3 -9999.0 \n",
+ "4 -9999.0 \n"
+ ]
+ }
+ ],
+ "source": [
+ "print(combined_bedmap_df.head(5))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 9,
+ "id": "6c755d44-9743-4c1a-81b0-d168cc050083",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " LON LAT THICK geometry EAST \\\n",
+ "0 76.889142 -69.876749 1046.6 POINT (2150724.686 500918.979) 2.150725e+06 \n",
+ "1 76.893603 -69.876762 1058.5 POINT (2150762.268 500751.208) 2.150762e+06 \n",
+ "2 76.899026 -69.876753 1061.1 POINT (2150810.656 500547.878) 2.150811e+06 \n",
+ "3 76.904100 -69.876424 1063.7 POINT (2150890.832 500365.723) 2.150891e+06 \n",
+ "4 76.909194 -69.876374 1069.8 POINT (2150940.759 500175.761) 2.150941e+06 \n",
+ "\n",
+ " NORTH \n",
+ "0 500918.979443 \n",
+ "1 500751.208165 \n",
+ "2 500547.878047 \n",
+ "3 500365.723321 \n",
+ "4 500175.761230 \n",
+ "EPSG:3031\n"
+ ]
+ }
+ ],
+ "source": [
+ "bedmap = combined_bedmap_df[['LON', 'LAT', 'THICK']]\n",
+ "bedmap_gdf = gpd.GeoDataFrame(\n",
+ " bedmap,\n",
+ " geometry=gpd.points_from_xy(bedmap['LON'], bedmap['LAT']), crs=\"EPSG:4326\").to_crs(\"EPSG:3031\")\n",
+ "bedmap_gdf['EAST'] = bedmap_gdf.geometry.x.values\n",
+ "bedmap_gdf['NORTH'] = bedmap_gdf.geometry.y.values\n",
+ "print(bedmap_gdf.head(5))\n",
+ "print(bedmap_gdf.crs)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 10,
+ "id": "f5789a54-d990-4fbb-a9ba-74271a9c02d0",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {},
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/vnd.holoviews_exec.v0+json": "",
+ "text/html": [
+ "\n",
+ ""
+ ],
+ "text/plain": [
+ ":DynamicMap []\n",
+ " :Image [EAST,NORTH] (EAST_NORTH THICK)"
+ ]
+ },
+ "metadata": {
+ "application/vnd.holoviews_exec.v0+json": {
+ "id": "p1006"
+ }
+ },
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "points_bedmap = hv.Points(bedmap_gdf, ['EAST', 'NORTH'], 'THICK') # HoloViews Points object\n",
+ "\n",
+ "formatter = PrintfTickFormatter(format='%i')\n",
+ "\n",
+ "# Rasterize the points\n",
+ "rasterized_bedmap = rasterize(points_bedmap,aggregator=ds.mean('THICK')).opts(\n",
+ " cmap=plt.colormaps['turbo'],\n",
+ " cnorm='eq_hist',\n",
+ " width=700,\n",
+ " height=700,\n",
+ " colorbar=True,\n",
+ " xaxis=None, # Remove x-axis\n",
+ " yaxis=None, # Remove y-axis\n",
+ " colorbar_opts={\n",
+ " 'title': 'Ice Thickness measurements [m]',\n",
+ " 'formatter': formatter, # Apply custom formatter to the colorbar,\n",
+ " \"ticker\": FixedTicker(ticks=[500, 1000, 1500, 2000, 2500, 3000, 4500])\n",
+ " },\n",
+ " colorbar_position='bottom',\n",
+ ")\n",
+ "\n",
+ "\n",
+ "# Display the plot\n",
+ "hv.output(rasterized_bedmap)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 11,
+ "id": "94501df0-faa1-4d8e-9353-6b9ac5fad59e",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "FOLDER_AN_VELOCITY = f\"/media/maffe/nvme/Antarctica_NSIDC/velocity/NSIDC-0754/\"\n",
+ "FOLDER_AN_THICKNESS = f\"/media/maffe/nvme/Antarctica_NSIDC/thickness/NSIDC-0756/\"\n",
+ "FOLDER_AN_RACMO = f\"/media/maffe/nvme/racmo/antarctica_racmo2.3p2/2km/\"\n",
+ "\n",
+ "file_an_v = f\"{FOLDER_AN_VELOCITY}antarctic_ice_vel_phase_map_v01.nc\"\n",
+ "file_an_smb = f\"{FOLDER_AN_RACMO}smb_antarctica_mean_1979_2021_RACMO23p2_gf.nc\"\n",
+ "file_an_bedmac = f\"{FOLDER_AN_THICKNESS}BedMachineAntarctica-v3.nc\""
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 12,
+ "id": "ad50fecf-a2b1-4a42-a3c3-2811bc612997",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "(450.0, -450.0)\n",
+ "(450.0, -450.0)\n",
+ "(500.0, -500.0)\n",
+ "(500.0, -500.0)\n",
+ "(2000.0, -2000.0)\n"
+ ]
+ }
+ ],
+ "source": [
+ "# Open Antarctica arrays\n",
+ "an_v = rioxarray.open_rasterio(file_an_v)\n",
+ "an_smb = rioxarray.open_rasterio(file_an_smb)\n",
+ "an_bedmac = rioxarray.open_rasterio(file_an_bedmac)\n",
+ "\n",
+ "print(an_v['VX'].rio.resolution())\n",
+ "print(an_v['VY'].rio.resolution())\n",
+ "print(an_bedmac['thickness'].rio.resolution())\n",
+ "print(an_bedmac['surface'].rio.resolution())\n",
+ "print(an_smb.rio.resolution())\n",
+ "\n",
+ "an_bedmac['thickness'] = an_bedmac['thickness'].where(an_bedmac['thickness'] != 0.0)\n",
+ "\n",
+ "# Calculate the slope\n",
+ "res_elevation = an_bedmac['surface'].rio.resolution()[0] # 500 m\n",
+ "#an_bedmac['slope'] = xrspatial.slope(an_bedmac['surface'].squeeze())\n",
+ "dz_dy, dz_dx = np.gradient(an_bedmac['surface'].squeeze(), res_elevation, res_elevation)\n",
+ "slope_raw = np.sqrt(dz_dx**2 + dz_dy**2)\n",
+ "an_bedmac['slope'] = (('y', 'x'), slope_raw)\n",
+ "\n",
+ "nodata_v = an_v['VX'].rio.nodata\n",
+ "\n",
+ "an_vx = an_v['VX']\n",
+ "an_vy = an_v['VY']\n",
+ "\n",
+ "an_vx.values = np.where(an_vx.values == nodata_v, np.nan, an_vx.values)\n",
+ "an_vy.values = np.where(an_vy.values == nodata_v, np.nan, an_vy.values)\n",
+ "\n",
+ "an_v['V'] = (an_vx**2 + an_vy**2)**0.5\n",
+ "\n",
+ "assert an_vx.rio.crs == an_vy.rio.crs == an_smb.rio.crs == an_bedmac.rio.crs, 'Different crs.'"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 13,
+ "id": "b2780631-db1b-4743-aade-36ee80ab1fdd",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# Interpolate arrays linearly\n",
+ "eastings_ar = xarray.DataArray(bedmap_gdf['EAST'])\n",
+ "northings_ar = xarray.DataArray(bedmap_gdf['NORTH'])\n",
+ "\n",
+ "elev_interp_data = an_bedmac['surface'].interp(y=northings_ar, x=eastings_ar, method='linear').data.squeeze()\n",
+ "ith_interp_data = an_bedmac['thickness'].interp(y=northings_ar, x=eastings_ar, method='linear').data.squeeze()\n",
+ "slope_interp_data = an_bedmac['slope'].interp(y=northings_ar, x=eastings_ar, method='linear').data.squeeze()\n",
+ "v_interp_data = an_v['V'].interp(y=northings_ar, x=eastings_ar, method='linear').data.squeeze()\n",
+ "smb_interp_data = an_smb.interp(y=northings_ar, x=eastings_ar, method='linear').data.squeeze()"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 14,
+ "id": "77979e91-f940-4b6c-80de-b63429b6832e",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# Plug in dataset\n",
+ "\n",
+ "bedmap_gdf['v'] = v_interp_data\n",
+ "bedmap_gdf['ith_bm'] = ith_interp_data\n",
+ "bedmap_gdf['smb'] = smb_interp_data\n",
+ "bedmap_gdf['z'] = elev_interp_data\n",
+ "bedmap_gdf['s'] = slope_interp_data"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 15,
+ "id": "fbed5871-84c1-4a9e-8860-5eb10c7caece",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Before dropping nans: 81087281 points\n",
+ "After dropping nans: 79890423 points\n"
+ ]
+ }
+ ],
+ "source": [
+ "print(f\"Before dropping nans: {len(bedmap_gdf)} points\")\n",
+ "bedmap_gdf = bedmap_gdf.dropna()\n",
+ "print(f\"After dropping nans: {len(bedmap_gdf)} points\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 16,
+ "id": "60179777-85be-44e0-9e45-e1ad6f91087a",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# Check no invalid points\n",
+ "invalid_count = (~bedmap_gdf.geometry.is_valid).sum()\n",
+ "assert invalid_count==0, f\"Invalid geometries: {invalid_count}\""
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 17,
+ "id": "a7ca8fce-e01c-4509-93a0-900fd552422d",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " THICK smb z s v\n",
+ "THICK 1.000000 -0.364856 0.742594 -0.346988 -0.240941\n",
+ "smb -0.364856 1.000000 -0.454212 0.368349 0.228904\n",
+ "z 0.742594 -0.454212 1.000000 -0.207117 -0.359341\n",
+ "s -0.346988 0.368349 -0.207117 1.000000 0.006415\n",
+ "v -0.240941 0.228904 -0.359341 0.006415 1.000000\n"
+ ]
+ }
+ ],
+ "source": [
+ "cols = ['THICK', 'smb', 'z', 's', 'v']\n",
+ "corr_matrix = bedmap_gdf[cols].corr()\n",
+ "print(corr_matrix)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 22,
+ "id": "1e0e4b26-26e7-4c02-ad7a-0c03f61c9203",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# Save\n",
+ "save = False\n",
+ "if save:\n",
+ " bedmap_gdf.to_parquet(f\"{bedmap_folder}/bedmap_train.parquet\", engine='pyarrow', index=False)\n",
+ " print(f\"Combined BedMap dataframe saved as parquet: {len(bedmap_gdf)} points.\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 18,
+ "id": "61e4a0f9-6602-4b08-9b38-6548f769ea1f",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {},
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/vnd.holoviews_exec.v0+json": "",
+ "text/html": [
+ "\n",
+ ""
+ ],
+ "text/plain": [
+ ":DynamicMap []\n",
+ " :Image [x,y] (slope)"
+ ]
+ },
+ "execution_count": 18,
+ "metadata": {
+ "application/vnd.holoviews_exec.v0+json": {
+ "id": "p1077"
+ }
+ },
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "# Plot\n",
+ "\n",
+ "x = an_bedmac['slope'].hvplot.image(\n",
+ " x='x', y='y',\n",
+ " rasterize=True,\n",
+ " dynamic=True,\n",
+ " #logz=True,\n",
+ " clim=(0, .3),\n",
+ ").opts(\n",
+ " cmap='binary',\n",
+ " width=700,\n",
+ " height=700,\n",
+ " xaxis=None,\n",
+ " yaxis=None,\n",
+ " title=\"\",\n",
+ " colorbar_opts={\n",
+ " 'title': 'Surface slope [unitless]',\n",
+ " },\n",
+ " colorbar_position='bottom',\n",
+ " tools=[]\n",
+ ")\n",
+ "\n",
+ "# HoloViews Points object\n",
+ "points = hv.Points(bedmap_gdf, ['EAST', 'NORTH'], 's')\n",
+ "\n",
+ "# Rasterize the points\n",
+ "#rasterized_points = rasterize(points,aggregator=ds.mean('s')).opts(\n",
+ "# cmap=plt.colormaps['turbo'],\n",
+ "# #logz=True,\n",
+ "# clim=(0, 2.5),\n",
+ "# colorbar=False,\n",
+ "# tools=['hover'],\n",
+ "#)\n",
+ "\n",
+ "\n",
+ "x #* rasterized_points"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "5adf4199-0970-444b-a714-421ed5cda0da",
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.12.7"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}