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README.md

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 PDeepPP is a hybrid protein language model designed to predict post-translational modification (PTM) sites, analyze biologically relevant features, and support a wide range of protein sequence analysis tasks. This repository serves as the central hub for accessing and exploring various specialized PDeepPP models, each fine-tuned for specific tasks, such as PTM site prediction, bioactivity analysis, and more.
 
+The models in this repository can all be used on their corresponding datasets on GitHub ([https://github.com/fondress/PDeepPP])
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 ## Overview
 
 PDeepPP integrates state-of-the-art transformer-based self-attention mechanisms with convolutional neural networks (CNNs) to capture both global and local features in protein sequences. By leveraging pretrained embeddings from `ESM` and incorporating modular architecture components, PDeepPP offers a robust framework for protein sequence analysis.
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 - [PDeepPP Methylation (Arginine)](https://huggingface.co/fondress/PDeepPP_Methylation-R)
 - [PDeepPP SUMOylation](https://huggingface.co/fondress/PDeepPP_SUMOylation)
 - [PDeepPP Ubiquitin](https://huggingface.co/fondress/PDeepPP_Ubiquitin)
+- [PDeepPP S-Palmitoylation](https://huggingface.co/fondress/PDeepPP_S-Palmitoylation)
+- [PDeepPP Hydroxyproline (P)](https://huggingface.co/fondress/PDeepPP_Hydroxyproline-P)
+- [PDeepPP Hydroxyproline (K)](https://huggingface.co/fondress/PDeepPP_Hydroxyproline-K)
+- [PDeepPP Pyrrolidone-carboxylic-acid (Q)](https://huggingface.co/fondress/PDeepPP_Pyrrolidone-carboxylic-acid-Q)
 
 #### Bioactivity Prediction
 - [PDeepPP ACE](https://huggingface.co/fondress/PDeepPP_ACE)
 - [PDeepPP BBP](https://huggingface.co/fondress/PDeepPP_BBP)
 - [PDeepPP DPPIV](https://huggingface.co/fondress/PDeepPP_DPPIV)
 - [PDeepPP Toxicity](https://huggingface.co/fondress/PDeepPP_Toxicity)
-- [PDeepPP Antimalarial](https://huggingface.co/fondress/PDeepPP_Antimalarial-main)
-- [PDeepPP Anticancer](https://huggingface.co/fondress/PDeepPP_Anticancer-main)
+- [PDeepPP Antimalarial (Main)](https://huggingface.co/fondress/PDeepPP_Antimalarial-main)
+- [PDeepPP Antimalarial (Alternative)](https://huggingface.co/fondress/PDeepPP_Antimalarial-alternative)
+- [PDeepPP Anticancer (Main)](https://huggingface.co/fondress/PDeepPP_Anticancer-main)
+- [PDeepPP Anticancer (Alternative)](https://huggingface.co/fondress/PDeepPP_Anticancer-alternative)
 - [PDeepPP Antiviral](https://huggingface.co/fondress/PDeepPP_Antiviral)
 - [PDeepPP Antioxidant](https://huggingface.co/fondress/PDeepPP_Antioxidant)
 - [PDeepPP Antibacterial](https://huggingface.co/fondress/PDeepPP_Antibacterial)
 - [PDeepPP Antifungal](https://huggingface.co/fondress/PDeepPP_Antifungal)
+- [PDeepPP Antimicrobial](https://huggingface.co/fondress/PDeepPP_Antimicrobial)
+- [PDeepPP Anti-MRSA](https://huggingface.co/fondress/PDeepPP_Anti-MRSA)
+- [PDeepPP Antiparasitic](https://huggingface.co/fondress/PDeepPP_Antiparasitic)
 - [PDeepPP Bitter](https://huggingface.co/fondress/PDeepPP_bitter)
 - [PDeepPP Umami](https://huggingface.co/fondress/PDeepPP_umami)
+- [PDeepPP Neuro](https://huggingface.co/fondress/PDeepPP_neuro)
 - [PDeepPP Quorum](https://huggingface.co/fondress/PDeepPP_Quorum)
 - [PDeepPP TTCA](https://huggingface.co/fondress/PDeepPP_TTCA)
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 ## Model Architecture