exp26_SOX2.bpnet.attribute.json

{
    "attr_filename": "exp26_SOX2.attributions.attr.npz",
    "batch_size": 64,
    "chroms": [
        "chr8",
        "chr20"
    ],
    "device": "cuda",
    "exclusion_lists": null,
    "idx_filename": "exp26_SOX2.attributions.idxs.npy",
    "in_window": 2114,
    "loci": [
        "/scratch/prj/stem_cells_pituitary/Bence/atacseq_chip_results/26/bwa/merged_library/macs2/narrow_peak/SOX2_REP1.mLb.clN_peaks.bed"
    ],
    "model": "exp26_SOX2.torch",
    "n_shuffles": 20,
    "ohe_filename": "exp26_SOX2.attributions.ohe.npz",
    "out_window": 1000,
    "output": "counts",
    "random_state": null,
    "sequences": "/scratch/prj/stem_cells_pituitary/Georgia/genome/mm10/mm10.fa",
    "skip": false,
    "verbose": true,
    "warning_threshold": 0.001
}