exp26_SOX2.evaluate.json

{
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        "chr20"
    ],
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    "dtype": "float32",
    "early_stopping": 5,
    "exclusion_lists": null,
    "in_window": 2114,
    "loci": [
        "/scratch/prj/stem_cells_pituitary/Bence/atacseq_chip_results/26/bwa/merged_library/macs2/narrow_peak/SOX2_REP1.mLb.clN_peaks.bed"
    ],
    "lr": 0.001,
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    "max_epochs": 20,
    "max_jitter": 0,
    "min_counts": 0,
    "model": "exp26_SOX2.torch",
    "n_filters": 64,
    "n_layers": 8,
    "name": "exp26_SOX2",
    "negative_ratio": 0.333,
    "negatives": [
        "/scratch/prj/stem_cells_pituitary/Bence/atacseq_chip_results/26/bwa/merged_library/macs2/narrow_peak/SOX2_negatives_bpnet.bed"
    ],
    "out_window": 1000,
    "performance_filename": "exp26_SOX2.performance.tsv",
    "profile_output_bias": true,
    "random_state": null,
    "reverse_complement": false,
    "reverse_complement_average": true,
    "scheduler": true,
    "sequences": "/scratch/prj/stem_cells_pituitary/Georgia/genome/mm10/mm10.fa",
    "signals": [
        "exp26_SOX2.bw"
    ],
    "skip": false,
    "summits": false,
    "training_chroms": [
        "chr2",
        "chr4",
        "chr5",
        "chr7",
        "chr9",
        "chr10",
        "chr11",
        "chr12",
        "chr13",
        "chr14",
        "chr15",
        "chr16",
        "chr17",
        "chr18",
        "chr19",
        "chr21",
        "chr22",
        "chrX",
        "chrY"
    ],
    "validation_chroms": [
        "chr8",
        "chr20"
    ],
    "verbose": true
}