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README.md
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# AIDO.StructurePrediction
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This model is a full-atom structure prediction model like AlphaFold3.
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Our model supports a wide range of data types including proteins, DNA, RNA, ligands, antibody, nanobody and their complex structures.
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<img src="doc/assets/fig1.png" width="500" />
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<img src="doc/assets/fig4.png" width="500" />
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<img src="doc/assets/fig2.png" width="500" />
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<img src="doc/assets/fig3.png" width="450" />
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## Research & Development
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The AIDO.StructurePrediction model is an AF3-like structure prediction model developed based on the public Protenix.
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We integrate many new ideas and training strategies. According to our benchmarking,
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our model achieved better performance on antibody or naonbody related data and comparable performance with AF3.
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## **Benchmarking Model Performance**
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<img src="assets/hln.png" width="500" />
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<img src="assets/monomer.png" width="500" />
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<img src="assets/ana.png" width="500" />
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<img src="assets/prl.png" width="500" />
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## Acknowledgments
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Special thanks to ByteDance for open-sourcing the Protenix code(https://github.com/bytedance/Protenix), which has been the foundation for our AIDO.StructurePrediction model.
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## How to Use
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Please see `experiments/AIDO.StructurePrediction` in [Model Generator](https://github.com/genbio-ai/modelgenerator) for more details.
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## Setup
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Install [Model Generator](https://github.com/genbio-ai/modelgenerator)
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