Update journal citation

README.md

@@ -19,14 +19,14 @@ Models are hosted on [Zenodo](https://zenodo.org/doi/10.5281/zenodo.11051644) an
 
 ### Model Description
 
-METL is discussed in the [paper](https://doi.org/10.1101/2024.03.15.585128) in further detail.
+METL is discussed in the [paper](https://doi.org/10.1038/s41592-025-02776-2) in further detail.
 The GitHub [repo](https://github.com/gitter-lab/metl) contains more documentation and includes scripts for training and predicting with METL.
 Google Colab notebooks for finetuning and predicting on publicly available METL models are available as well [here](https://github.com/gitter-lab/metl/tree/main/notebooks).
 
 ### Model Sources
 
 - **Repository:** [METL repo](https://github.com/gitter-lab/metl)
-- **Paper:** [METL preprint](https://doi.org/10.1101/2024.03.15.585128)
+- **Paper:** [METL publication](https://doi.org/10.1038/s41592-025-02776-2)
 - **Demo:** [Hugging Face Spaces demo](https://huggingface.co/spaces/gitter-lab/METL_demo)
 
 ## How to Get Started with the Model
@@ -72,9 +72,10 @@ with torch.no_grad():
 
 ## Citation
 
-Biophysics-based protein language models for protein engineering  
-Sam Gelman, Bryce Johnson, Chase Freschlin, Arnav Sharma, Sameer D'Costa, John Peters, Anthony Gitter, Philip A. Romero  
-bioRxiv 2024.03.15.585128; doi: https://doi.org/10.1101/2024.03.15.585128
+[Biophysics-based protein language models for protein engineering](https://doi.org/10.1038/s41592-025-02776-2).  
+Sam Gelman, Bryce Johnson, Chase R Freschlin, Arnav Sharma, Sameer D'Costa, John Peters, Anthony Gitter<sup>+</sup>, Philip A Romero<sup>+</sup>.  
+*Nature Methods* 22, 2025.  
+<sup>+</sup> denotes equal contribution.
 
 ## Model Card Contact