Commit
·
6e9ff05
1
Parent(s):
fe5151f
Create README.md
Browse files
README.md
ADDED
|
@@ -0,0 +1,87 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Gretel's baseline text2table was fine-tuned on togethercomputer's RedPajama-INCITE-instruct-3B-v1 model for 100 epochs on 8A100 80GB gpu's. The fine-tuning used ~2k training samples (text and table pairs) that were generated using OpenAI.
|
| 2 |
+
|
| 3 |
+
## Data Formatting
|
| 4 |
+
|
| 5 |
+
```python
|
| 6 |
+
INSTRUCTION_KEY = "### Instruction: Given the following prompt, generate a table"
|
| 7 |
+
RESPONSE_KEY = "### Response:"
|
| 8 |
+
INTRO_BLURB = "Below is an instruction that describes a task. Write a response that appropriately completes the request."
|
| 9 |
+
PROMPT_FOR_GENERATION_FORMAT = """{intro}
|
| 10 |
+
{instruction_key}
|
| 11 |
+
{prompt_to_generate_table}
|
| 12 |
+
{response_key}
|
| 13 |
+
{table}
|
| 14 |
+
""".format(
|
| 15 |
+
intro=INTRO_BLURB,
|
| 16 |
+
instruction_key=INSTRUCTION_KEY,
|
| 17 |
+
prompt_to_generate_table"{PROMPT}",
|
| 18 |
+
response_key=RESPONSE_KEY,
|
| 19 |
+
table="{TABLE}"
|
| 20 |
+
)
|
| 21 |
+
```
|
| 22 |
+
|
| 23 |
+
## For generation purposes:
|
| 24 |
+
|
| 25 |
+
```python
|
| 26 |
+
import torch
|
| 27 |
+
from transformers import (
|
| 28 |
+
AutoModelForCausalLM,
|
| 29 |
+
AutoTokenizer,
|
| 30 |
+
)
|
| 31 |
+
tokenizer = AutoTokenizer.from_pretrained('gretelai/text2table', padding_side="right")
|
| 32 |
+
model = AutoModelForCausalLM.from_pretrained('gretelai/text2table').to('cuda', dtype=torch.bfloat16)
|
| 33 |
+
|
| 34 |
+
model.eval()
|
| 35 |
+
|
| 36 |
+
INSTRUCTION_KEY = "### Instruction: Given the following prompt, generate a table. Each column should have random values."
|
| 37 |
+
RESPONSE_KEY = "### Response:"
|
| 38 |
+
INTRO_BLURB = "Below is an instruction that describes a task. Write a response that appropriately completes the request."
|
| 39 |
+
PROMPT_FOR_GENERATION_FORMAT = """{intro}
|
| 40 |
+
{instruction_key}
|
| 41 |
+
{prompt_to_generate_table}
|
| 42 |
+
{response_key}
|
| 43 |
+
""".format(
|
| 44 |
+
intro=INTRO_BLURB,
|
| 45 |
+
instruction_key=INSTRUCTION_KEY,
|
| 46 |
+
prompt_to_generate_table="{PROMPT}",
|
| 47 |
+
response_key=RESPONSE_KEY,
|
| 48 |
+
)
|
| 49 |
+
|
| 50 |
+
PROMPT = "Create a dataset with four columns: patient, sex, agegrp, bp_before and bp_after. The patient column is a numerical identifier, sex is the gender of the patient, agegrp is the age group of the patient, bp_before is the blood pressure (in mmHg) before a certain treatment, and bp_after is the blood pressure (in mmHg) after a certain treatment."
|
| 51 |
+
inputs = PROMPT_FOR_GENERATION_FORMAT.format(instruction=instruction)
|
| 52 |
+
tokenizer.pad_token = tokenizer.eos_token
|
| 53 |
+
input = tokenizer(inputs, return_tensors="pt").to('cuda')
|
| 54 |
+
input_ids = input['input_ids']
|
| 55 |
+
outputs = model.generate(**input, max_length = 1024)
|
| 56 |
+
table = tokenizer.decode(outputs[0], skip_special_tokens=False)
|
| 57 |
+
```
|
| 58 |
+
|
| 59 |
+
## Output
|
| 60 |
+
|
| 61 |
+
```python
|
| 62 |
+
PROMPT = "Create a dataset with four columns: patient, sex, agegrp, bp_before and bp_after. The patient column is a numerical identifier, sex is the gender of the patient, agegrp is the age group of the patient, bp_before is the blood pressure (in mmHg) before a certain treatment, and bp_after is the blood pressure (in mmHg) after a certain treatment."
|
| 63 |
+
|
| 64 |
+
MODEL GENERATION ->
|
| 65 |
+
|
| 66 |
+
Below is an instruction that describes a task. Write a response that appropriately completes the request.
|
| 67 |
+
Instruction: Given the following prompt, generate a table. Each column should have random values.
|
| 68 |
+
Create a dataset with four columns: patient, sex, agegrp, bp_before and bp_after. The patient column is a numerical identifier, sex is the gender of the patient, agegrp is the age group of the patient, bp_before is the blood pressure (in mmHg) before a certain treatment, and bp_after is the blood pressure (in mmHg) after a certain treatment.
|
| 69 |
+
Response:
|
| 70 |
+
patient,sex,agegrp,bp_before,bp_after
|
| 71 |
+
1.0,F,45.0,183.0,124.0,234.0
|
| 72 |
+
2.0,F,60.0,183.0,124.0,183.0
|
| 73 |
+
3.0,F,70.0,179.0,117.0,183.0
|
| 74 |
+
4.0,M,30.0,141.0,136.0,161.0
|
| 75 |
+
5.0,M,70.0,147.0,129.0,157.0
|
| 76 |
+
6.0,M,40.0,140.0,136.0,156.0
|
| 77 |
+
7.0,M,60.0,140.0,116.0,157.0
|
| 78 |
+
8.0,M,70.0,144.0,131.0,161.0
|
| 79 |
+
9.0,M,60.0,142.0,119.0,157.0
|
| 80 |
+
10.0,M,70.0,147.0,132.0,167.0
|
| 81 |
+
11.0,M,60.0,147.0,136.0,166.0
|
| 82 |
+
12.0,M,70.0,150.0,132.0,172.0
|
| 83 |
+
13.0,M,60.0,149.0,137.0,162.0
|
| 84 |
+
14.0,M,70.0,156.0,124.0,157.0
|
| 85 |
+
15.0,M,60.0,156.0,181.0,157.0
|
| 86 |
+
16.0,M,70.0,156.0,131.0,158.0
|
| 87 |
+
```
|