gzhong commited on
Commit
3952062
·
verified ·
1 Parent(s): 85f736f

Upload folder using huggingface_hub

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. .gitattributes +11 -0
  2. analysis/results.tar +3 -0
  3. data.files/ALL.csv.gz +3 -0
  4. data.files/ASPA.tgz +3 -0
  5. data.files/CCR5.tgz +3 -0
  6. data.files/CXCR4.tgz +3 -0
  7. data.files/CYP2C9.tgz +3 -0
  8. data.files/GCK.tgz +3 -0
  9. data.files/ICC.seed.0.tgz +3 -0
  10. data.files/ICC.seed.1.tgz +3 -0
  11. data.files/ICC.seed.2.tgz +3 -0
  12. data.files/ICC.seed.3.tgz +3 -0
  13. data.files/ICC.seed.4.tgz +3 -0
  14. data.files/MSA.tgz.part-aa +3 -0
  15. data.files/NUDT15.tgz +3 -0
  16. data.files/PTEN.bin.tgz +3 -0
  17. data.files/PTEN.replicate.rest.1.tgz +3 -0
  18. data.files/PTEN.replicate.rest.2.tgz +3 -0
  19. data.files/PTEN.replicate.rest.3.tgz +3 -0
  20. data.files/PTEN.replicate.rest.4.tgz +3 -0
  21. data.files/PTEN.replicate.rest.5.tgz +3 -0
  22. data.files/PTEN.replicate.rest.6.tgz +3 -0
  23. data.files/PTEN.replicate.rest.7.tgz +3 -0
  24. data.files/PTEN.replicate.rest.8.tgz +3 -0
  25. data.files/PTEN.tgz +3 -0
  26. data.files/SNCA.tgz +3 -0
  27. data.files/Stab.tgz +3 -0
  28. data.files/af2.files.tgz.part-aa +3 -0
  29. data.files/esm.MSA.tgz.part-aa +3 -0
  30. data.files/esm.MSA.tgz.part-ab +3 -0
  31. data.files/esm.files.tgz.part-aa +3 -0
  32. data.files/esm.files.tgz.part-ab +3 -0
  33. data.files/esm.files.tgz.part-ac +3 -0
  34. data.files/esm.files.tgz.part-ad +3 -0
  35. data.files/esm.files.tgz.part-ae +3 -0
  36. data.files/fluorescence.tgz +3 -0
  37. data.files/gMVP.MSA.tgz.part-aa +3 -0
  38. data.files/pretrain.tgz.part-aa +3 -0
  39. data.files/pretrain/manuscript/testing.csv.gz +3 -0
  40. data.files/pretrain/manuscript/training.0.csv.gz +3 -0
  41. data.files/pretrain/manuscript/training.1.csv.gz +3 -0
  42. data.files/pretrain/manuscript/training.2.csv.gz +3 -0
  43. data.files/pretrain/manuscript/training.3.csv.gz +3 -0
  44. data.files/pretrain/manuscript/training.csv.gz +3 -0
  45. data.files/pretrain/remove.hgmd.R +5 -0
  46. data.files/pretrain/revision.remove.glof.paralog/training.0.csv.gz +3 -0
  47. data.files/pretrain/revision.remove.glof.paralog/training.1.csv.gz +3 -0
  48. data.files/pretrain/revision.remove.glof.paralog/training.2.csv.gz +3 -0
  49. data.files/pretrain/revision.remove.glof.paralog/training.3.csv.gz +3 -0
  50. data.files/pretrain/revision.remove.glof.paralog/training.csv.gz +3 -0
.gitattributes CHANGED
@@ -33,3 +33,14 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
36
+ data.files/MSA.tgz.part-aa filter=lfs diff=lfs merge=lfs -text
37
+ data.files/af2.files.tgz.part-aa filter=lfs diff=lfs merge=lfs -text
38
+ data.files/esm.MSA.tgz.part-aa filter=lfs diff=lfs merge=lfs -text
39
+ data.files/esm.MSA.tgz.part-ab filter=lfs diff=lfs merge=lfs -text
40
+ data.files/esm.files.tgz.part-aa filter=lfs diff=lfs merge=lfs -text
41
+ data.files/esm.files.tgz.part-ab filter=lfs diff=lfs merge=lfs -text
42
+ data.files/esm.files.tgz.part-ac filter=lfs diff=lfs merge=lfs -text
43
+ data.files/esm.files.tgz.part-ad filter=lfs diff=lfs merge=lfs -text
44
+ data.files/esm.files.tgz.part-ae filter=lfs diff=lfs merge=lfs -text
45
+ data.files/gMVP.MSA.tgz.part-aa filter=lfs diff=lfs merge=lfs -text
46
+ data.files/pretrain.tgz.part-aa filter=lfs diff=lfs merge=lfs -text
analysis/results.tar ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ba7e906d29539f61210be9dd6d0366d956ec2e33908e6fa63431dcbf56ce7ee9
3
+ size 2256742400
data.files/ALL.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7ba809ae66bc775ff9072934ade95a242fc378962eb6562fca5e926e6eadd5d2
3
+ size 11103682
data.files/ASPA.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f5e401c824edb3ae63e05d973dafb82a40e0c0b4167f8ea8a44f255cb2e61a2f
3
+ size 6497828
data.files/CCR5.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:32b1fd9f3c79438e5804c24fbfd63db0f102741d60837e1735d03e554005027a
3
+ size 5790823
data.files/CXCR4.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5be7e596768b968ec92ae5a74857fc9d047d03a1387fed181fa378edf41eb057
3
+ size 5826481
data.files/CYP2C9.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d89ae48ab501c9b110c8da0b89ebe40a8843b3af8a80ce26a751f9548f246984
3
+ size 7476136
data.files/GCK.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6af4a7f205161f42e26b645c0c7baa468be540af912a5349cc700945a10429e7
3
+ size 9954541
data.files/ICC.seed.0.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fb36b5eadfefc849887c480554752f43a6b76c545a2ced700d260a1cfe56c592
3
+ size 4588973
data.files/ICC.seed.1.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:402f281b6b1f83da14b1b1ab81774c2da45a67883f6c0d9d778a804a15722bd2
3
+ size 4577813
data.files/ICC.seed.2.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:82a8afea44f05506266ffcddce3dcbff145aad59427b606b7c4d5356fba26a80
3
+ size 4577738
data.files/ICC.seed.3.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4b52b45a04a73cf531bc9be4ef31785dc3dd2f8b0cb649aa4b8fd3ed3ec5c99e
3
+ size 4588209
data.files/ICC.seed.4.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:405b089729ebdcc19710f135d06e31896cfbd4a99b0e4098926443aa218817f9
3
+ size 4563681
data.files/MSA.tgz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:670504f78fb5828face000895457b0bdf006e2c762f90546d4160c1741abdad7
3
+ size 756213964
data.files/NUDT15.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ac39d81c5d54a408e4a024961cd889f2702cab1f7ed40d83262067f1314c494f
3
+ size 2648155
data.files/PTEN.bin.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dbe7d33dbbf5630c5c161986eb052f12deb61b7ccbf678fa7ff5bc7897ba4c59
3
+ size 983279
data.files/PTEN.replicate.rest.1.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0a5a8491533eb09736c97526c22aa83220d3df81cbc3e086d0c97cf82fecbac4
3
+ size 4065895
data.files/PTEN.replicate.rest.2.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7e22735a538e5dc3ffbf3926514ea32a3b8ef5638f0fd274eacab37ec3e076f7
3
+ size 4065999
data.files/PTEN.replicate.rest.3.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a6bb4a7d231337c8436e3a0b46af24e7b8e87953c75676ed9849a6d27b87157d
3
+ size 4065725
data.files/PTEN.replicate.rest.4.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:90216071931145f6c8b4a2ec31224f7bb1edce8a43490e16a57173a6cc634433
3
+ size 4065705
data.files/PTEN.replicate.rest.5.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:87694c8d852f9d79230f7e064b4079902b17b4e4a66347b9b359902d987d8e23
3
+ size 4065975
data.files/PTEN.replicate.rest.6.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7c2afb3de5c57da35333d61dc11e48732916455cd4f48430c0291161702797fa
3
+ size 4065851
data.files/PTEN.replicate.rest.7.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:470a04794e6e88bc525ca7ca9de5f05ba0c4406cd321b3aa11a6f77beda102d2
3
+ size 4065635
data.files/PTEN.replicate.rest.8.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c9004017f797684b8166ab337e3ba7211a0920fbc733d69ef1192d449d5ce51b
3
+ size 4065531
data.files/PTEN.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4eff76435a175961076847bdea25b79f2a45a548a9b1f393dc1d73a32fbca170
3
+ size 4244420
data.files/SNCA.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:da09fe734efc81689f94e280656d497f3c3118e3389498b945bbae5daa0bd562
3
+ size 1932672
data.files/Stab.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7b4332f6557b56d355eb012317070675941c985f217f5a52c032e4789af5dc1f
3
+ size 49191908
data.files/af2.files.tgz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b8c99e093f3deb83e5cf57f7d3f2003af69268e2d7020342d23d98dfe8464342
3
+ size 1747009312
data.files/esm.MSA.tgz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a2a14923d1aaea14ad3ccedaafc5cc89b819811cc6fd8fd58584a7572dff0d91
3
+ size 10737418240
data.files/esm.MSA.tgz.part-ab ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a40159327f7454b4ff2ee5285e3bb7d778936bca39e41649d369aa3a3499a6aa
3
+ size 2929687838
data.files/esm.files.tgz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:98a5c81d3651a6cc33c0e99a4e2b206fae7ee26c3bf9a0df8ee006741004a8c6
3
+ size 10737418240
data.files/esm.files.tgz.part-ab ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9caf98a5e3acba2a0ca3f9a3c3effe2803e82c0a3114bf5f911f77f105e9a949
3
+ size 10737418240
data.files/esm.files.tgz.part-ac ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fa44afe7158f565e229a8ead8d8760cb8393340c6e3287e457385d9678cb31df
3
+ size 10737418240
data.files/esm.files.tgz.part-ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:91d4e1b0fa3a399a6755537f64783cbe6eb0a731e2d7812f091a4919d3c39268
3
+ size 10737418240
data.files/esm.files.tgz.part-ae ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b975435639ee8fc7ab9b45da83a35dc2f246a943aec53a59d459b6a46ab6a85d
3
+ size 362286942
data.files/fluorescence.tgz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1089b47959bb0540b338460de27a666dd1788372d3bb499e0b33fa4089c05448
3
+ size 15124238
data.files/gMVP.MSA.tgz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b9e251ed2ac02926a7f121b585eef3bb8fe351826c2ebf2410fc93f1a7dcd146
3
+ size 3105673966
data.files/pretrain.tgz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3d4f19e4fca0765d0ede2c93de380d0134c14c906ce3b75232893727c1ba0f9b
3
+ size 894753652
data.files/pretrain/manuscript/testing.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4ce066487c65d6a810759ed7087960959bc860e45409cdb2e8b946bdb37173f1
3
+ size 1138034
data.files/pretrain/manuscript/training.0.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4d1bfe529668cf8706daae5b69b602775add2787b7f88ad367810e3d08c97b53
3
+ size 24972339
data.files/pretrain/manuscript/training.1.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f4918e5ba8c2e4ccb27505a6517b32b228ccf4eacce4d4052c7562c80ce90245
3
+ size 22754591
data.files/pretrain/manuscript/training.2.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bfcc1224356ae0e684d1d8f64f4b24ad3d78b552f158f16e009bf2e30c7681e7
3
+ size 22809905
data.files/pretrain/manuscript/training.3.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dec4591c575c60228349b2eac512afb67513bb5d7e78a4dc22f401192bb1b84c
3
+ size 22286420
data.files/pretrain/manuscript/training.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dc50e2d1946267babc3ccb267374d13196c1a145ff58476b5d33f9968e80f7da
3
+ size 93760937
data.files/pretrain/remove.hgmd.R ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ args <- commandArgs(trailingOnly = TRUE)
2
+ df.path <- args[1]
3
+ df <- read.csv(df.path, row.names = 1)
4
+ df <- df[df$data_source != 'HGMD',]
5
+ write.csv(df, df.path)
data.files/pretrain/revision.remove.glof.paralog/training.0.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8ed7cf24a1d9124429bf5c5a773a88503e5a23e6ca3f765d546f42aaf6bce49b
3
+ size 21683286
data.files/pretrain/revision.remove.glof.paralog/training.1.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e7aa5f59031549a65e2b12c32c78d0d5d95188e240118bd596aa7b5f77cf56d9
3
+ size 22262315
data.files/pretrain/revision.remove.glof.paralog/training.2.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bea3922ce2db687f1491415abe4b34ffa565b7e08c299d26eec81757118e8dfd
3
+ size 21214228
data.files/pretrain/revision.remove.glof.paralog/training.3.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d18943fef06d31bad0ef73158c65356bb00b307f2aba1d34479c13bf8a0bb189
3
+ size 24029182
data.files/pretrain/revision.remove.glof.paralog/training.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b2e569d17869a3fe4d1eb44e57a5b9fd33ec549d1a4128851cceb06348abf96a
3
+ size 90510755