Instructions to use habdine/Prot2Text-Small-v1-0 with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

Libraries

How to use habdine/Prot2Text-Small-v1-0 with Transformers:

# Use a pipeline as a high-level helper
from transformers import pipeline

pipe = pipeline("text-generation", model="habdine/Prot2Text-Small-v1-0", trust_remote_code=True)

# Load model directly
from transformers import AutoModel
model = AutoModel.from_pretrained("habdine/Prot2Text-Small-v1-0", trust_remote_code=True, dtype="auto")

Notebooks
Google Colab
Kaggle
Local Apps Settings

vLLM

How to use habdine/Prot2Text-Small-v1-0 with vLLM:

Install from pip and serve model

# Install vLLM from pip:
pip install vllm
# Start the vLLM server:
vllm serve "habdine/Prot2Text-Small-v1-0"
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:8000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "habdine/Prot2Text-Small-v1-0",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Use Docker

docker model run hf.co/habdine/Prot2Text-Small-v1-0

SGLang

How to use habdine/Prot2Text-Small-v1-0 with SGLang:

Install from pip and serve model

# Install SGLang from pip:
pip install sglang
# Start the SGLang server:
python3 -m sglang.launch_server \
    --model-path "habdine/Prot2Text-Small-v1-0" \
    --host 0.0.0.0 \
    --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "habdine/Prot2Text-Small-v1-0",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Use Docker images

docker run --gpus all \
    --shm-size 32g \
    -p 30000:30000 \
    -v ~/.cache/huggingface:/root/.cache/huggingface \
    --env "HF_TOKEN=<secret>" \
    --ipc=host \
    lmsysorg/sglang:latest \
    python3 -m sglang.launch_server \
        --model-path "habdine/Prot2Text-Small-v1-0" \
        --host 0.0.0.0 \
        --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "habdine/Prot2Text-Small-v1-0",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Docker Model Runner
How to use habdine/Prot2Text-Small-v1-0 with Docker Model Runner:
```
docker model run hf.co/habdine/Prot2Text-Small-v1-0
```

habdine commited on Sep 13, 2024

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e2fbda1

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@@ -9,8 +9,17 @@ library_name: transformers
 pipeline_tag: text-generation
 language:
 - en
 license: cc-by-nc-4.0
 ---
 # Prot2Text Model Card
@@ -20,7 +29,7 @@ license: cc-by-nc-4.0
 **Paper:** [https://arxiv.org/abs/2307.14367](https://arxiv.org/abs/2307.14367) <br>
 **Github:** [https://github.com/hadi-abdine/Prot2Text](https://github.com/hadi-abdine/Prot2Text) <br>
 **Authors:** Hadi Abdine<sup>(1)</sup>, Michail Chatzianastasis<sup>(1)</sup>, Costas Bouyioukos<sup>(2, 3)</sup>, Michalis Vazirgiannis<sup>(1)</sup><br>
-<sup>**(1)**</sup>DaSciM, LIX, ÉcolePolytechnique, Institut Polytechnique de Paris, France.<br>
 <sup>**(2)**</sup>Epigenetics and Cell Fate, CNRS UMR7216, Université Paris Cité, Paris, France.<br>
 <sup>**(3)**</sup>Bioinformatics Research Laboratory, Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus.<br>

 pipeline_tag: text-generation
 language:
 - en
 license: cc-by-nc-4.0
+datasets:
+- habdine/Prot2Text-Data
+metrics:
+- bertscore
+- bleu
+- rouge
+base_model:
+- openai-community/gpt2
+- facebook/esm2_t12_35M_UR50D
+- facebook/esm2_t6_8M_UR50D
 ---
 # Prot2Text Model Card
 **Paper:** [https://arxiv.org/abs/2307.14367](https://arxiv.org/abs/2307.14367) <br>
 **Github:** [https://github.com/hadi-abdine/Prot2Text](https://github.com/hadi-abdine/Prot2Text) <br>
 **Authors:** Hadi Abdine<sup>(1)</sup>, Michail Chatzianastasis<sup>(1)</sup>, Costas Bouyioukos<sup>(2, 3)</sup>, Michalis Vazirgiannis<sup>(1)</sup><br>
+<sup>**(1)**</sup>DaSciM, LIX, École Polytechnique, Institut Polytechnique de Paris, France.<br>
 <sup>**(2)**</sup>Epigenetics and Cell Fate, CNRS UMR7216, Université Paris Cité, Paris, France.<br>
 <sup>**(3)**</sup>Bioinformatics Research Laboratory, Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus.<br>