"""PathoCNN demo: predict one bundled sample per class (native 28x28 test patches, in-distribution), then print the first misclassified test images with their confidences — the failures are part of the demo, not edited out. This is a mechanics demo on a 28x28 benchmark model, not a clinical tool. """ import glob import os import sys import numpy as np sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "src")) HERE = os.path.dirname(os.path.abspath(__file__)) PKG = os.path.dirname(HERE) from pathocnn import LABELS, load_model, predict # noqa: E402 from pathocnn.infer import TRAIN_MEAN, TRAIN_STD # noqa: E402 model = load_model(os.path.join(PKG, "model.safetensors")) print("== bundled demo samples: first PathMNIST test patch of each class (28x28) ==") for path in sorted(glob.glob(os.path.join(PKG, "assets", "demo_samples", "*.png"))): cls = int(os.path.basename(path).split("_")[0]) r = predict(model, path) mark = "OK " if r["label"] == LABELS[cls] else "MISS" print(f"[{mark}] true={LABELS[cls]:38s} -> predicted {r['label']:38s} " f"(confidence {r['confidence']:.1%})") print("\n== first misclassified test patches (from assets/pathmnist_test.npz) ==") import torch # noqa: E402 d = np.load(os.path.join(PKG, "assets", "pathmnist_test.npz")) x_test = d["test_images"] y_test = d["test_labels"].ravel() mean = np.asarray(TRAIN_MEAN, dtype=np.float32) std = np.asarray(TRAIN_STD, dtype=np.float32) shown = 0 with torch.no_grad(): for i in range(0, len(x_test), 512): xb = (x_test[i:i + 512].astype(np.float32) / 255.0 - mean) / std xt = torch.from_numpy(xb.transpose(0, 3, 1, 2)) probs = torch.softmax(model(xt), 1).numpy() for j, p in enumerate(probs): pred = int(p.argmax()) if pred != int(y_test[i + j]) and shown < 5: print(f"test[{i + j}] true={LABELS[int(y_test[i + j])]} -> predicted " f"{LABELS[pred]} (confidence {p[pred]:.1%})") shown += 1 if shown >= 5: break