cff-version: 1.2.0
message: "Please cite the associated manuscript for scientific findings and cite this repository for the recovered public implementation."
title: "COSTE + DST-GNN Manuscript Code"
type: software
authors:
  - family-names: "Hu"
    given-names: "Taobo"
  - family-names: "Long"
    given-names: "Mengping"
repository-code: "https://huggingface.co/hutaobo/ccst-spatial-clustering"
license: "CC-BY-NC-4.0"
keywords:
  - spatial omics
  - tissue architecture
  - graph neural network
  - temporal analysis
abstract: "Cleaned public implementation of the manuscript-aligned DST-GNN analysis for temporal COSTE/SSS cell-type interaction graphs. The Hugging Face repository slug is historical and retained for continuity."
preferred-citation:
  type: article
  title: "Cophenetic Spatial Topology Embedding reveals multiscale tissue architecture in spatial omics"
  authors:
    - family-names: "Long"
      given-names: "Mengping"
    - family-names: "Hu"
      given-names: "Taobo"
    - family-names: "Sountoulidis"
      given-names: "Alexandros"
    - family-names: "Samakovlis"
      given-names: "Christos"
    - family-names: "Nilsson"
      given-names: "Mats"
  note: "Biological conclusions and manuscript figures should be attributed to the manuscript. This repository contains the recovered public code implementation."