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{
"cells": [
{
"cell_type": "code",
"execution_count": 2,
"id": "35f75455",
"metadata": {},
"outputs": [],
"source": [
"import pandas as pd\n",
"import scanpy as sc"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "9bf2a8e1",
"metadata": {},
"outputs": [],
"source": []
},
{
"cell_type": "code",
"execution_count": 5,
"id": "729ff858",
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
"adata = sc.read_h5ad(\"/home/tl688/zhao_project/data/replogle_rpe1_essential/perturb_processed.h5ad\")"
]
},
{
"cell_type": "code",
"execution_count": 6,
"id": "69d90bbe",
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"AnnData object with n_obs × n_vars = 162733 × 5000\n",
" obs: 'condition', 'cell_type', 'cov_drug_dose_name', 'dose_val', 'control', 'condition_name'\n",
" var: 'gene_name', 'chr', 'start', 'end', 'class', 'strand', 'length', 'in_matrix', 'mean', 'std', 'cv', 'fano', 'highly_variable', 'means', 'dispersions', 'dispersions_norm'\n",
" uns: 'hvg', 'non_dropout_gene_idx', 'non_zeros_gene_idx', 'rank_genes_groups_cov_all', 'top_non_dropout_de_20', 'top_non_zero_de_20'"
]
},
"execution_count": 6,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"adata"
]
},
{
"cell_type": "code",
"execution_count": 10,
"id": "63d53007",
"metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
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"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>gene_name</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>ENSG00000228463</th>\n",
" <td>AP006222.2</td>\n",
" </tr>\n",
" <tr>\n",
" <th>ENSG00000272438</th>\n",
" <td>RP11-54O7.16</td>\n",
" </tr>\n",
" <tr>\n",
" <th>ENSG00000230699</th>\n",
" <td>RP11-54O7.1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>ENSG00000223764</th>\n",
" <td>RP11-54O7.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>ENSG00000187634</th>\n",
" <td>SAMD11</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>ENSG00000233922</th>\n",
" <td>AL133493.2</td>\n",
" </tr>\n",
" <tr>\n",
" <th>ENSG00000142156</th>\n",
" <td>COL6A1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>ENSG00000228137</th>\n",
" <td>AP001469.7</td>\n",
" </tr>\n",
" <tr>\n",
" <th>ENSG00000160298</th>\n",
" <td>C21orf58</td>\n",
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" <tr>\n",
" <th>ENSG00000160299</th>\n",
" <td>PCNT</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>5060 rows × 1 columns</p>\n",
"</div>"
],
"text/plain": [
" gene_name\n",
"ENSG00000228463 AP006222.2\n",
"ENSG00000272438 RP11-54O7.16\n",
"ENSG00000230699 RP11-54O7.1\n",
"ENSG00000223764 RP11-54O7.3\n",
"ENSG00000187634 SAMD11\n",
"... ...\n",
"ENSG00000233922 AL133493.2\n",
"ENSG00000142156 COL6A1\n",
"ENSG00000228137 AP001469.7\n",
"ENSG00000160298 C21orf58\n",
"ENSG00000160299 PCNT\n",
"\n",
"[5060 rows x 1 columns]"
]
},
"execution_count": 10,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"adata.var"
]
},
{
"cell_type": "code",
"execution_count": 11,
"id": "5d185ece",
"metadata": {},
"outputs": [],
"source": [
"map_dict = {}\n",
"for i in adata.var.index:\n",
" map_dict[i] = adata.var.loc[i]['gene_name']"
]
},
{
"cell_type": "code",
"execution_count": 12,
"id": "2afe017b",
"metadata": {},
"outputs": [
{
"data": {
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" 'ENSG00000004487': 'KDM1A',\n",
" 'ENSG00000125944': 'HNRNPR',\n",
" 'ENSG00000249087': 'C1orf213',\n",
" 'ENSG00000117318': 'ID3',\n",
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" 'ENSG00000131914': 'LIN28A',\n",
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" 'ENSG00000162511': 'LAPTM5',\n",
" 'ENSG00000162512': 'SDC3',\n",
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" 'ENSG00000078618': 'NRD1',\n",
" 'ENSG00000266993': 'RP4-657D16.3',\n",
" 'ENSG00000117862': 'TXNDC12',\n",
" 'ENSG00000223390': 'RP11-91A18.4',\n",
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" 'ENSG00000226476': 'RP11-776H12.1',\n",
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" 'ENSG00000162434': 'JAK1',\n",
" 'ENSG00000231485': 'RP4-535B20.1',\n",
" 'ENSG00000213625': 'LEPROT',\n",
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" 'ENSG00000198160': 'MIER1',\n",
" 'ENSG00000116717': 'GADD45A',\n",
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" 'ENSG00000162613': 'FUBP1',\n",
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" 'ENSG00000117155': 'SSX2IP',\n",
" 'ENSG00000142867': 'BCL10',\n",
" 'ENSG00000117174': 'ZNHIT6',\n",
" 'ENSG00000122417': 'ODF2L',\n",
" 'ENSG00000016490': 'CLCA1',\n",
" 'ENSG00000097033': 'SH3GLB1',\n",
" 'ENSG00000267734': 'RP4-604K5.3',\n",
" 'ENSG00000224198': 'RP4-604K5.2',\n",
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" 'ENSG00000162645': 'GBP2',\n",
" 'ENSG00000197147': 'LRRC8B',\n",
" 'ENSG00000162664': 'ZNF326',\n",
" 'ENSG00000069712': 'KIAA1107',\n",
" 'ENSG00000122484': 'RPAP2',\n",
" 'ENSG00000067208': 'EVI5',\n",
" 'ENSG00000137942': 'FNBP1L',\n",
" 'ENSG00000137936': 'BCAR3',\n",
" 'ENSG00000067334': 'DNTTIP2',\n",
" 'ENSG00000122481': 'RWDD3',\n",
" 'ENSG00000156869': 'FRRS1',\n",
" 'ENSG00000122477': 'LRRC39',\n",
" 'ENSG00000137992': 'DBT',\n",
" 'ENSG00000170989': 'S1PR1',\n",
" 'ENSG00000273382': 'RP5-1065J22.8',\n",
" 'ENSG00000270066': 'SCARNA2',\n",
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" 'ENSG00000134222': 'PSRC1',\n",
" 'ENSG00000221986': 'MYBPHL',\n",
" 'ENSG00000134243': 'SORT1',\n",
" 'ENSG00000134201': 'GSTM5',\n",
" 'ENSG00000134202': 'GSTM3',\n",
" 'ENSG00000261055': 'RP11-195M16.3',\n",
" 'ENSG00000184371': 'CSF1',\n",
" 'ENSG00000273373': 'RP5-1074L1.4',\n",
" 'ENSG00000143119': 'CD53',\n",
" 'ENSG00000232811': 'RP11-96K19.2',\n",
" 'ENSG00000121931': 'LRIF1',\n",
" 'ENSG00000162777': 'DENND2D',\n",
" 'ENSG00000064886': 'CHI3L2',\n",
" 'ENSG00000085465': 'OVGP1',\n",
" 'ENSG00000143110': 'C1orf162',\n",
" 'ENSG00000197852': 'FAM212B',\n",
" 'ENSG00000143079': 'CTTNBP2NL',\n",
" 'ENSG00000007341': 'ST7L',\n",
" 'ENSG00000225075': 'RP11-426L16.3',\n",
" 'ENSG00000155366': 'RHOC',\n",
" 'ENSG00000215866': 'RP11-426L16.8',\n",
" 'ENSG00000238198': 'RP11-31F15.2',\n",
" 'ENSG00000116793': 'PHTF1',\n",
" 'ENSG00000226167': 'AP4B1-AS1',\n",
" 'ENSG00000235527': 'RP5-1073O3.7',\n",
" 'ENSG00000134207': 'SYT6',\n",
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" 'ENSG00000163393': 'SLC22A15',\n",
" 'ENSG00000269279': 'AL136376.1',\n",
" 'ENSG00000224950': 'RP5-1086K13.1',\n",
" 'ENSG00000116815': 'CD58',\n",
" 'ENSG00000198162': 'MAN1A2',\n",
" 'ENSG00000183508': 'FAM46C',\n",
" 'ENSG00000065183': 'WDR3',\n",
" 'ENSG00000231365': 'RP11-418J17.1',\n",
" 'ENSG00000092621': 'PHGDH',\n",
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" 'ENSG00000230880': 'RP11-417J8.3',\n",
" 'ENSG00000234978': 'RP11-423O2.5',\n",
" 'ENSG00000242569': 'RP11-435B5.3',\n",
" 'ENSG00000236943': 'RP11-640M9.1',\n",
" 'ENSG00000178104': 'PDE4DIP',\n",
" 'ENSG00000268172': 'AL590452.1',\n",
" 'ENSG00000163386': 'NBPF10',\n",
" 'ENSG00000168509': 'HFE2',\n",
" 'ENSG00000117289': 'TXNIP',\n",
" 'ENSG00000121851': 'POLR3GL',\n",
" 'ENSG00000117281': 'CD160',\n",
" 'ENSG00000174827': 'PDZK1',\n",
" 'ENSG00000237188': 'RP11-337C18.8',\n",
" 'ENSG00000271721': 'RP11-337C18.9',\n",
" 'ENSG00000231196': 'RP11-495P10.8',\n",
" 'ENSG00000272824': 'RP6-74O6.6',\n",
" 'ENSG00000243452': 'NBPF15',\n",
" 'ENSG00000203827': 'NBPF16',\n",
" 'ENSG00000232527': 'RP11-14N7.2',\n",
" 'ENSG00000229801': 'RP11-353N4.1',\n",
" 'ENSG00000150337': 'FCGR1A',\n",
" 'ENSG00000272993': 'RP11-196G18.24',\n",
" 'ENSG00000184678': 'HIST2H2BE',\n",
" 'ENSG00000184260': 'HIST2H2AC',\n",
" 'ENSG00000159164': 'SV2A',\n",
" 'ENSG00000014914': 'MTMR11',\n",
" 'ENSG00000023902': 'PLEKHO1',\n",
" 'ENSG00000143401': 'ANP32E',\n",
" 'ENSG00000271845': 'RP4-790G17.7',\n",
" 'ENSG00000117360': 'PRPF3',\n",
" 'ENSG00000163125': 'RPRD2',\n",
" 'ENSG00000143369': 'ECM1',\n",
" 'ENSG00000228126': 'LINC00568',\n",
" 'ENSG00000237781': 'RP11-54A4.2',\n",
" 'ENSG00000143384': 'MCL1',\n",
" 'ENSG00000163131': 'CTSS',\n",
" 'ENSG00000143387': 'CTSK',\n",
" 'ENSG00000143409': 'FAM63A',\n",
" 'ENSG00000143443': 'C1orf56',\n",
" 'ENSG00000197622': 'CDC42SE1',\n",
" 'ENSG00000213190': 'MLLT11',\n",
" 'ENSG00000163154': 'TNFAIP8L2',\n",
" 'ENSG00000163155': 'LYSMD1',\n",
" 'ENSG00000159352': 'PSMD4',\n",
" 'ENSG00000143416': 'SELENBP1',\n",
" 'ENSG00000143367': 'TUFT1',\n",
" 'ENSG00000227045': 'RP11-98D18.1',\n",
" 'ENSG00000269489': 'RP11-98D18.17',\n",
" 'ENSG00000197747': 'S100A10',\n",
" 'ENSG00000163191': 'S100A11',\n",
" 'ENSG00000143520': 'FLG2',\n",
" 'ENSG00000203783': 'PRR9',\n",
" 'ENSG00000163218': 'PGLYRP4',\n",
" 'ENSG00000163220': 'S100A9',\n",
" 'ENSG00000196420': 'S100A5',\n",
" 'ENSG00000196154': 'S100A4',\n",
" 'ENSG00000188015': 'S100A3',\n",
" 'ENSG00000196754': 'S100A2',\n",
" 'ENSG00000188643': 'S100A16',\n",
" 'ENSG00000189334': 'S100A14',\n",
" 'ENSG00000189171': 'S100A13',\n",
" 'ENSG00000160678': 'S100A1',\n",
" 'ENSG00000143614': 'GATAD2B',\n",
" 'ENSG00000273026': 'RP11-422P24.10',\n",
" 'ENSG00000143545': 'RAB13',\n",
" 'ENSG00000177954': 'RPS27',\n",
" 'ENSG00000143549': 'TPM3',\n",
" 'ENSG00000143575': 'HAX1',\n",
" 'ENSG00000143595': 'AQP10',\n",
" 'ENSG00000160712': 'IL6R',\n",
" 'ENSG00000160710': 'ADAR',\n",
" 'ENSG00000270361': 'RP11-307C12.13',\n",
" 'ENSG00000163346': 'PBXIP1',\n",
" 'ENSG00000173207': 'CKS1B',\n",
" 'ENSG00000169242': 'EFNA1',\n",
" 'ENSG00000116539': 'ASH1L',\n",
" 'ENSG00000132718': 'SYT11',\n",
" 'ENSG00000143622': 'RIT1',\n",
" 'ENSG00000132680': 'KIAA0907',\n",
" 'ENSG00000116584': 'ARHGEF2',\n",
" 'ENSG00000273002': 'RP11-336K24.12',\n",
" 'ENSG00000163479': 'SSR2',\n",
" 'ENSG00000132698': 'RAB25',\n",
" 'ENSG00000160789': 'LMNA',\n",
" 'ENSG00000160781': 'PAQR6',\n",
" 'ENSG00000125462': 'C1orf61',\n",
" 'ENSG00000236947': 'RP11-98G7.1',\n",
" 'ENSG00000116604': 'MEF2D',\n",
" 'ENSG00000160818': 'GPATCH4',\n",
" 'ENSG00000272068': 'RP11-284F21.9',\n",
" 'ENSG00000132692': 'BCAN',\n",
" 'ENSG00000272405': 'RP11-284F21.10',\n",
" 'ENSG00000229953': 'RP11-284F21.7',\n",
" 'ENSG00000132688': 'NES',\n",
" 'ENSG00000143320': 'CRABP2',\n",
" 'ENSG00000027869': 'SH2D2A',\n",
" 'ENSG00000198400': 'NTRK1',\n",
" 'ENSG00000132694': 'ARHGEF11',\n",
" 'ENSG00000117036': 'ETV3',\n",
" 'ENSG00000271736': 'RP11-85G21.3',\n",
" 'ENSG00000163565': 'IFI16',\n",
" 'ENSG00000158716': 'DUSP23',\n",
" 'ENSG00000213085': 'CCDC19',\n",
" 'ENSG00000018625': 'ATP1A2',\n",
" 'ENSG00000132681': 'ATP1A4',\n",
" 'ENSG00000162734': 'PEA15',\n",
" 'ENSG00000228606': 'RP11-574F21.2',\n",
" 'ENSG00000122218': 'COPA',\n",
" 'ENSG00000171786': 'NHLH1',\n",
" 'ENSG00000162739': 'SLAMF6',\n",
" 'ENSG00000066294': 'CD84',\n",
" 'ENSG00000117090': 'SLAMF1',\n",
" 'ENSG00000122223': 'CD244',\n",
" 'ENSG00000179914': 'ITLN1',\n",
" 'ENSG00000158764': 'ITLN2',\n",
" 'ENSG00000215845': 'TSTD1',\n",
" 'ENSG00000186517': 'ARHGAP30',\n",
" 'ENSG00000143217': 'PVRL4',\n",
" 'ENSG00000158859': 'ADAMTS4',\n",
" 'ENSG00000158869': 'FCER1G',\n",
" 'ENSG00000158887': 'MPZ',\n",
" 'ENSG00000235477': 'RP11-122G18.5',\n",
" 'ENSG00000273075': 'RP11-122G18.8',\n",
" 'ENSG00000143226': 'FCGR2A',\n",
" 'ENSG00000173110': 'HSPA6',\n",
" 'ENSG00000118217': 'ATF6',\n",
" 'ENSG00000198929': 'NOS1AP',\n",
" 'ENSG00000152332': 'UHMK1',\n",
" 'ENSG00000143228': 'NUF2',\n",
" 'ENSG00000185630': 'PBX1',\n",
" 'ENSG00000143183': 'TMCO1',\n",
" 'ENSG00000234142': 'RP11-276E17.2',\n",
" 'ENSG00000143190': 'POU2F1',\n",
" 'ENSG00000143162': 'CREG1',\n",
" 'ENSG00000198771': 'RCSD1',\n",
" 'ENSG00000232194': 'RP1-313L4.3',\n",
" 'ENSG00000143158': 'MPC2',\n",
" 'ENSG00000228697': 'RP5-968D22.1',\n",
" 'ENSG00000143153': 'ATP1B1',\n",
" 'ENSG00000075945': 'KIFAP3',\n",
" 'ENSG00000076258': 'FMO4',\n",
" 'ENSG00000117523': 'PRRC2C',\n",
" 'ENSG00000094975': 'SUCO',\n",
" 'ENSG00000270084': 'GAS5-AS1',\n",
" 'ENSG00000152061': 'RABGAP1L',\n",
" 'ENSG00000203737': 'GPR52',\n",
" 'ENSG00000116161': 'CACYBP',\n",
" 'ENSG00000236021': 'RP11-195C7.1',\n",
" 'ENSG00000213057': 'C1orf220',\n",
" 'ENSG00000273384': 'RP5-1098D14.1',\n",
" 'ENSG00000273062': 'RP11-428K3.1',\n",
" 'ENSG00000116191': 'RALGPS2',\n",
" 'ENSG00000143322': 'ABL2',\n",
" 'ENSG00000162779': 'AXDND1',\n",
" 'ENSG00000169905': 'TOR1AIP2',\n",
" 'ENSG00000143337': 'TOR1AIP1',\n",
" 'ENSG00000135837': 'CEP350',\n",
" 'ENSG00000116260': 'QSOX1',\n",
" 'ENSG00000135835': 'KIAA1614',\n",
" 'ENSG00000135823': 'STX6',\n",
" 'ENSG00000153029': 'MR1',\n",
" 'ENSG00000162783': 'IER5',\n",
" 'ENSG00000272198': 'RP11-309G3.3',\n",
" 'ENSG00000135828': 'RNASEL',\n",
" 'ENSG00000143333': 'RGS16',\n",
" 'ENSG00000261504': 'RP11-317P15.4',\n",
" 'ENSG00000135838': 'NPL',\n",
" 'ENSG00000135829': 'DHX9',\n",
" 'ENSG00000116698': 'SMG7',\n",
" 'ENSG00000116701': 'NCF2',\n",
" 'ENSG00000162704': 'ARPC5',\n",
" 'ENSG00000198756': 'COLGALT2',\n",
" 'ENSG00000198860': 'TSEN15',\n",
" 'ENSG00000135842': 'FAM129A',\n",
" 'ENSG00000047410': 'TPR',\n",
" 'ENSG00000116711': 'PLA2G4A',\n",
" 'ENSG00000134371': 'CDC73',\n",
" 'ENSG00000162630': 'B3GALT2',\n",
" 'ENSG00000232077': 'LINC01031',\n",
" 'ENSG00000231714': 'RP11-476H20.1',\n",
" 'ENSG00000000971': 'CFH',\n",
" 'ENSG00000116785': 'CFHR3',\n",
" 'ENSG00000066279': 'ASPM',\n",
" 'ENSG00000177888': 'ZBTB41',\n",
" 'ENSG00000081237': 'PTPRC',\n",
" 'ENSG00000203721': 'LINC00862',\n",
" 'ENSG00000162702': 'ZNF281',\n",
" 'ENSG00000118193': 'KIF14',\n",
" 'ENSG00000260088': 'RP11-92G12.3',\n",
" 'ENSG00000118200': 'CAMSAP2',\n",
" 'ENSG00000223396': 'RPS10P7',\n",
" 'ENSG00000134369': 'NAV1',\n",
" 'ENSG00000231871': 'IPO9-AS1',\n",
" 'ENSG00000198892': 'SHISA4',\n",
" 'ENSG00000223774': 'RP11-307B6.3',\n",
" 'ENSG00000163435': 'ELF3',\n",
" 'ENSG00000143862': 'ARL8A',\n",
" 'ENSG00000143851': 'PTPN7',\n",
" 'ENSG00000077152': 'UBE2T',\n",
" 'ENSG00000077157': 'PPP1R12B',\n",
" 'ENSG00000117139': 'KDM5B',\n",
" 'ENSG00000143847': 'PPFIA4',\n",
" 'ENSG00000133063': 'CHIT1',\n",
" 'ENSG00000231507': 'RP11-134P9.3',\n",
" 'ENSG00000159388': 'BTG2',\n",
" 'ENSG00000188783': 'PRELP',\n",
" 'ENSG00000058668': 'ATP2B4',\n",
" 'ENSG00000058673': 'ZC3H11A',\n",
" 'ENSG00000257315': 'ZBED6',\n",
" 'ENSG00000143842': 'SOX13',\n",
" 'ENSG00000143850': 'PLEKHA6',\n",
" 'ENSG00000198625': 'MDM4',\n",
" 'ENSG00000240710': 'RP11-430C7.4',\n",
" 'ENSG00000163531': 'NFASC',\n",
" 'ENSG00000133069': 'TMCC2',\n",
" 'ENSG00000163545': 'NUAK2',\n",
" 'ENSG00000162873': 'KLHDC8A',\n",
" 'ENSG00000117266': 'CDK18',\n",
" 'ENSG00000069275': 'NUCKS1',\n",
" 'ENSG00000268313': 'AC119673.1',\n",
" 'ENSG00000229874': 'RP11-312O7.2',\n",
" 'ENSG00000226780': 'RP11-38J22.3',\n",
" 'ENSG00000196533': 'C1orf186',\n",
" 'ENSG00000196188': 'CTSE',\n",
" 'ENSG00000143466': 'IKBKE',\n",
" 'ENSG00000136653': 'RASSF5',\n",
" 'ENSG00000162889': 'MAPKAPK2',\n",
" 'ENSG00000162892': 'IL24',\n",
" 'ENSG00000162896': 'PIGR',\n",
" 'ENSG00000180667': 'YOD1',\n",
" 'ENSG00000196352': 'CD55',\n",
" 'ENSG00000117322': 'CR2',\n",
" 'ENSG00000197721': 'CR1L',\n",
" 'ENSG00000117335': 'CD46',\n",
" 'ENSG00000117650': 'NEK2',\n",
" 'ENSG00000123684': 'LPGAT1',\n",
" 'ENSG00000143476': 'DTL',\n",
" 'ENSG00000226251': 'RP11-15I11.3',\n",
" 'ENSG00000066027': 'PPP2R5A',\n",
" 'ENSG00000234915': 'RP11-384C4.7',\n",
" 'ENSG00000117691': 'NENF',\n",
" 'ENSG00000162772': 'ATF3',\n",
" 'ENSG00000203705': 'TATDN3',\n",
" 'ENSG00000136643': 'RPS6KC1',\n",
" 'ENSG00000117707': 'PROX1',\n",
" 'ENSG00000152104': 'PTPN14',\n",
" 'ENSG00000117724': 'CENPF',\n",
" 'ENSG00000232480': 'RP11-224O19.2',\n",
" 'ENSG00000136628': 'EPRS',\n",
" 'ENSG00000067704': 'IARS2',\n",
" 'ENSG00000117791': 'MARC2',\n",
" 'ENSG00000257551': 'HLA-AS1',\n",
" 'ENSG00000143507': 'DUSP10',\n",
" 'ENSG00000154305': 'MIA3',\n",
" 'ENSG00000272750': 'RP11-378J18.8',\n",
" 'ENSG00000162819': 'BROX',\n",
" 'ENSG00000162909': 'CAPN2',\n",
" 'ENSG00000143514': 'TP53BP2',\n",
" 'ENSG00000162923': 'WDR26',\n",
" 'ENSG00000143786': 'CNIH3',\n",
" 'ENSG00000143815': 'LBR',\n",
" 'ENSG00000242861': 'RP11-285F7.2',\n",
" 'ENSG00000196187': 'TMEM63A',\n",
" 'ENSG00000243709': 'LEFTY1',\n",
" 'ENSG00000143768': 'LEFTY2',\n",
" 'ENSG00000143751': 'SDE2',\n",
" 'ENSG00000182827': 'ACBD3',\n",
" 'ENSG00000143799': 'PARP1',\n",
" 'ENSG00000143776': 'CDC42BPA',\n",
" 'ENSG00000181450': 'ZNF678',\n",
" 'ENSG00000143816': 'WNT9A',\n",
" 'ENSG00000162913': 'C1orf145',\n",
" 'ENSG00000154358': 'OBSCN',\n",
" 'ENSG00000270104': 'RP11-245P10.6',\n",
" 'ENSG00000116574': 'RHOU',\n",
" 'ENSG00000177788': 'RP5-1061H20.4',\n",
" 'ENSG00000237481': 'RP4-803J11.2',\n",
" 'ENSG00000143641': 'GALNT2',\n",
" 'ENSG00000224407': 'RP5-956O18.3',\n",
" 'ENSG00000182118': 'FAM89A',\n",
" 'ENSG00000119283': 'TRIM67',\n",
" 'ENSG00000212916': 'MAP10',\n",
" 'ENSG00000183780': 'SLC35F3',\n",
" 'ENSG00000168264': 'IRF2BP2',\n",
" 'ENSG00000227630': 'LINC01132',\n",
" 'ENSG00000054267': 'ARID4B',\n",
" 'ENSG00000168243': 'GNG4',\n",
" 'ENSG00000086619': 'ERO1LB',\n",
" 'ENSG00000116977': 'LGALS8',\n",
" 'ENSG00000119285': 'HEATR1',\n",
" 'ENSG00000077522': 'ACTN2',\n",
" 'ENSG00000198626': 'RYR2',\n",
" 'ENSG00000133019': 'CHRM3',\n",
" 'ENSG00000117009': 'KMO',\n",
" 'ENSG00000054277': 'OPN3',\n",
" 'ENSG00000203668': 'CHML',\n",
" 'ENSG00000174371': 'EXO1',\n",
" 'ENSG00000143702': 'CEP170',\n",
" 'ENSG00000054282': 'SDCCAG8',\n",
" 'ENSG00000117020': 'AKT3',\n",
" 'ENSG00000179456': 'ZBTB18',\n",
" 'ENSG00000173728': 'C1orf100',\n",
" 'ENSG00000188206': 'HNRNPU-AS1',\n",
" 'ENSG00000153187': 'HNRNPU',\n",
" 'ENSG00000185420': 'SMYD3',\n",
" 'ENSG00000242042': 'RP11-690C23.2',\n",
" 'ENSG00000162852': 'CNST',\n",
" 'ENSG00000153207': 'AHCTF1',\n",
" 'ENSG00000135747': 'ZNF670',\n",
" 'ENSG00000196418': 'ZNF124',\n",
" 'ENSG00000232347': 'RP11-488L18.8',\n",
" 'ENSG00000177212': 'OR2T33',\n",
" 'ENSG00000198104': 'OR2T6',\n",
" 'ENSG00000171161': 'ZNF672',\n",
" 'ENSG00000225234': 'TRAPPC12-AS1',\n",
" 'ENSG00000225964': 'AC017076.5',\n",
" 'ENSG00000134321': 'RSAD2',\n",
" 'ENSG00000271947': 'RP11-439M11.1',\n",
" 'ENSG00000236008': 'AC011747.4',\n",
" 'ENSG00000115738': 'ID2',\n",
" 'ENSG00000134313': 'KIDINS220',\n",
" 'ENSG00000151693': 'ASAP2',\n",
" 'ENSG00000134330': 'IAH1',\n",
" 'ENSG00000151694': 'ADAM17',\n",
" 'ENSG00000271855': 'RP11-214N9.1',\n",
" 'ENSG00000272524': 'RP11-254F7.4',\n",
" 'ENSG00000171848': 'RRM2',\n",
" 'ENSG00000115756': 'HPCAL1',\n",
" 'ENSG00000115758': 'ODC1',\n",
" 'ENSG00000243819': 'RN7SL832P',\n",
" 'ENSG00000143882': 'ATP6V1C2',\n",
" 'ENSG00000143870': 'PDIA6',\n",
" 'ENSG00000134318': 'ROCK2',\n",
" 'ENSG00000224177': 'LINC00570',\n",
" 'ENSG00000134324': 'LPIN1',\n",
" 'ENSG00000224184': 'AC096559.1',\n",
" 'ENSG00000071575': 'TRIB2',\n",
" 'ENSG00000151779': 'NBAS',\n",
" 'ENSG00000233718': 'MYCNOS',\n",
" 'ENSG00000134323': 'MYCN',\n",
" 'ENSG00000197872': 'FAM49A',\n",
" 'ENSG00000163029': 'SMC6',\n",
" 'ENSG00000236204': 'AC092594.1',\n",
" 'ENSG00000183891': 'TTC32',\n",
" 'ENSG00000271991': 'RP11-79O8.1',\n",
" 'ENSG00000115884': 'SDC1',\n",
" 'ENSG00000143878': 'RHOB',\n",
" 'ENSG00000260396': 'AC012065.7',\n",
" 'ENSG00000119771': 'KLHL29',\n",
" 'ENSG00000119778': 'ATAD2B',\n",
" 'ENSG00000163026': 'C2orf44',\n",
" 'ENSG00000219626': 'FAM228B',\n",
" 'ENSG00000186453': 'FAM228A',\n",
" 'ENSG00000198399': 'ITSN2',\n",
" 'ENSG00000138031': 'ADCY3',\n",
" 'ENSG00000272048': 'RP11-458N5.1',\n",
" 'ENSG00000143970': 'ASXL2',\n",
" 'ENSG00000115163': 'CENPA',\n",
" 'ENSG00000231636': 'AGBL5-AS1',\n",
" 'ENSG00000272148': 'RP11-195B17.1',\n",
" 'ENSG00000228474': 'OST4',\n",
" 'ENSG00000138028': 'CGREF1',\n",
" 'ENSG00000084774': 'CAD',\n",
" 'ENSG00000163794': 'UCN',\n",
" 'ENSG00000115211': 'EIF2B4',\n",
" 'ENSG00000115216': 'NRBP1',\n",
" 'ENSG00000157992': 'KRTCAP3',\n",
" 'ENSG00000115226': 'FNDC4',\n",
" 'ENSG00000084734': 'GCKR',\n",
" 'ENSG00000221843': 'C2orf16',\n",
" 'ENSG00000075426': 'FOSL2',\n",
" 'ENSG00000270210': 'RP11-373D23.3',\n",
" 'ENSG00000163803': 'PLB1',\n",
" 'ENSG00000213639': 'PPP1CB',\n",
" 'ENSG00000163806': 'SPDYA',\n",
" 'ENSG00000163811': 'WDR43',\n",
" 'ENSG00000189350': 'FAM179A',\n",
" 'ENSG00000119801': 'YPEL5',\n",
" 'ENSG00000213626': 'LBH',\n",
" 'ENSG00000271228': 'CTC-336P14.1',\n",
" 'ENSG00000021574': 'SPAST',\n",
" 'ENSG00000272716': 'RP11-563N4.1',\n",
" 'ENSG00000272754': 'AL133245.2',\n",
" 'ENSG00000115760': 'BIRC6',\n",
" 'ENSG00000049323': 'LTBP1',\n",
" 'ENSG00000152689': 'RASGRP3',\n",
" 'ENSG00000150938': 'CRIM1',\n",
" 'ENSG00000268688': 'AC007382.1',\n",
" 'ENSG00000115808': 'STRN',\n",
" 'ENSG00000055332': 'EIF2AK2',\n",
" 'ENSG00000163171': 'CDC42EP3',\n",
" 'ENSG00000115875': 'SRSF7',\n",
" 'ENSG00000011566': 'MAP4K3',\n",
" 'ENSG00000231312': 'AC007246.3',\n",
" 'ENSG00000152154': 'TMEM178A',\n",
" 'ENSG00000162878': 'PKDCC',\n",
" 'ENSG00000224875': 'AC083949.1',\n",
" 'ENSG00000143924': 'EML4',\n",
" 'ENSG00000152518': 'ZFP36L2',\n",
" 'ENSG00000234936': 'AC010883.5',\n",
" 'ENSG00000152527': 'PLEKHH2',\n",
" 'ENSG00000138095': 'LRPPRC',\n",
" 'ENSG00000116016': 'EPAS1',\n",
" 'ENSG00000180398': 'MCFD2',\n",
" 'ENSG00000143933': 'CALM2',\n",
" 'ENSG00000116062': 'MSH6',\n",
" 'ENSG00000170802': 'FOXN2',\n",
" 'ENSG00000119737': 'GPR75',\n",
" 'ENSG00000068878': 'PSME4',\n",
" 'ENSG00000170634': 'ACYP2',\n",
" 'ENSG00000115306': 'SPTBN1',\n",
" 'ENSG00000115310': 'RTN4',\n",
" 'ENSG00000162994': 'CLHC1',\n",
" 'ENSG00000143947': 'RPS27A',\n",
" 'ENSG00000115355': 'CCDC88A',\n",
" 'ENSG00000162924': 'REL',\n",
" 'ENSG00000115464': 'USP34',\n",
" 'ENSG00000270820': 'RP11-355B11.2',\n",
" 'ENSG00000082898': 'XPO1',\n",
" 'ENSG00000115504': 'EHBP1',\n",
" 'ENSG00000231609': 'AC009501.4',\n",
" 'ENSG00000197329': 'PELI1',\n",
" 'ENSG00000223935': 'AC008074.3',\n",
" 'ENSG00000260101': 'RP11-568N6.1',\n",
" 'ENSG00000119844': 'AFTPH',\n",
" 'ENSG00000115902': 'SLC1A4',\n",
" 'ENSG00000138071': 'ACTR2',\n",
" 'ENSG00000143995': 'MEIS1',\n",
" 'ENSG00000143971': 'ETAA1',\n",
" 'ENSG00000273064': 'RP11-474G23.3',\n",
" 'ENSG00000119865': 'CNRIP1',\n",
" 'ENSG00000115956': 'PLEK',\n",
" 'ENSG00000163219': 'ARHGAP25',\n",
" 'ENSG00000169604': 'ANTXR1',\n",
" 'ENSG00000198380': 'GFPT1',\n",
" 'ENSG00000188971': 'RP11-427H3.3',\n",
" 'ENSG00000115977': 'AAK1',\n",
" 'ENSG00000196975': 'ANXA4',\n",
" 'ENSG00000059728': 'MXD1',\n",
" 'ENSG00000116005': 'PCYOX1',\n",
" 'ENSG00000228384': 'AC007040.6',\n",
" 'ENSG00000272735': 'RP11-467P9.1',\n",
" 'ENSG00000075292': 'ZNF638',\n",
" 'ENSG00000273245': 'RP11-434P11.2',\n",
" 'ENSG00000163017': 'ACTG2',\n",
" 'ENSG00000255989': 'RP11-711M9.1',\n",
" 'ENSG00000163170': 'BOLA3',\n",
" 'ENSG00000065911': 'MTHFD2',\n",
" 'ENSG00000159239': 'C2orf81',\n",
" 'ENSG00000135622': 'SEMA4F',\n",
" 'ENSG00000270462': 'RP11-342K6.3',\n",
" 'ENSG00000066032': 'CTNNA2',\n",
" 'ENSG00000034510': 'TMSB10',\n",
" 'ENSG00000152291': 'TGOLN2',\n",
" 'ENSG00000042493': 'CAPG',\n",
" 'ENSG00000168906': 'MAT2A',\n",
" 'ENSG00000168899': 'VAMP5',\n",
" 'ENSG00000115525': 'ST3GAL5',\n",
" 'ENSG00000272564': 'RP11-548P2.2',\n",
" 'ENSG00000068615': 'REEP1',\n",
" 'ENSG00000115548': 'KDM3A',\n",
" 'ENSG00000239305': 'RNF103',\n",
" 'ENSG00000222041': 'LINC00152',\n",
" 'ENSG00000273445': 'RP11-1399P15.1',\n",
" 'ENSG00000172086': 'KRCC1',\n",
" 'ENSG00000174501': 'ANKRD36C',\n",
" 'ENSG00000235480': 'RP11-363D14.1',\n",
" 'ENSG00000196843': 'ARID5A',\n",
" 'ENSG00000273265': 'RP11-353K11.1',\n",
" 'ENSG00000168754': 'FAM178B',\n",
" 'ENSG00000135976': 'ANKRD36',\n",
" 'ENSG00000230606': 'AC159540.1',\n",
" 'ENSG00000075568': 'TMEM131',\n",
" 'ENSG00000071073': 'MGAT4A',\n",
" 'ENSG00000273045': 'C2ORF15',\n",
" 'ENSG00000185674': 'LYG2',\n",
" 'ENSG00000144214': 'LYG1',\n",
" 'ENSG00000115604': 'IL18R1',\n",
" 'ENSG00000272861': 'RP11-332H14.1',\n",
" 'ENSG00000233339': 'AC018878.3',\n",
" 'ENSG00000198075': 'SULT1C4',\n",
" 'ENSG00000135968': 'GCC2',\n",
" 'ENSG00000169756': 'LIMS1',\n",
" 'ENSG00000153201': 'RANBP2',\n",
" 'ENSG00000257207': 'LIMS3',\n",
" 'ENSG00000169679': 'BUB1',\n",
" 'ENSG00000172965': 'MIR4435-1HG',\n",
" 'ENSG00000271590': 'RP11-181E10.3',\n",
" 'ENSG00000270190': 'RP11-803D5.4',\n",
" 'ENSG00000153214': 'TMEM87B',\n",
" 'ENSG00000188177': 'ZC3H6',\n",
" 'ENSG00000228251': 'AC012442.6',\n",
" 'ENSG00000144136': 'SLC20A1',\n",
" 'ENSG00000144130': 'NT5DC4',\n",
" 'ENSG00000169607': 'CKAP2L',\n",
" 'ENSG00000136689': 'IL1RN',\n",
" 'ENSG00000270019': 'RP11-141B14.1',\n",
" 'ENSG00000115091': 'ACTR3',\n",
" 'ENSG00000234199': 'AC010982.1',\n",
" 'ENSG00000155368': 'DBI',\n",
" 'ENSG00000144118': 'RALB',\n",
" 'ENSG00000136732': 'GYPC',\n",
" 'ENSG00000115718': 'PROC',\n",
" 'ENSG00000163166': 'IWS1',\n",
" 'ENSG00000136731': 'UGGT1',\n",
" 'ENSG00000196604': 'POTEF',\n",
" 'ENSG00000152076': 'CCDC74B',\n",
" 'ENSG00000136710': 'CCDC115',\n",
" 'ENSG00000115762': 'PLEKHB2',\n",
" 'ENSG00000188219': 'POTEE',\n",
" 'ENSG00000178206': 'CYP4F31P',\n",
" 'ENSG00000163040': 'CCDC74A',\n",
" 'ENSG00000224559': 'LINC01087',\n",
" 'ENSG00000197927': 'C2orf27A',\n",
" 'ENSG00000152127': 'MGAT5',\n",
" 'ENSG00000082258': 'CCNT2',\n",
" 'ENSG00000115839': 'RAB3GAP1',\n",
" 'ENSG00000226806': 'AC011893.3',\n",
" 'ENSG00000115866': 'DARS',\n",
" 'ENSG00000150540': 'HNMT',\n",
" 'ENSG00000169554': 'ZEB2',\n",
" 'ENSG00000121989': 'ACVR2A',\n",
" 'ENSG00000204406': 'MBD5',\n",
" 'ENSG00000231969': 'AC144449.1',\n",
" 'ENSG00000183091': 'NEB',\n",
" 'ENSG00000226383': 'AC093375.1',\n",
" 'ENSG00000153234': 'NR4A2',\n",
" 'ENSG00000136542': 'GALNT5',\n",
" 'ENSG00000115165': 'CYTIP',\n",
" 'ENSG00000234584': 'AC019186.1',\n",
" 'ENSG00000271320': 'RP11-1152H14.1',\n",
" 'ENSG00000115183': 'TANC1',\n",
" 'ENSG00000123636': 'BAZ2B',\n",
" 'ENSG00000224152': 'AC009506.1',\n",
" 'ENSG00000136536': 'MARCH7',\n",
" 'ENSG00000136560': 'TANK',\n",
" 'ENSG00000115233': 'PSMD14',\n",
" 'ENSG00000144290': 'SLC4A10',\n",
" 'ENSG00000115267': 'IFIH1',\n",
" 'ENSG00000115271': 'GCA',\n",
" 'ENSG00000184611': 'KCNH7',\n",
" 'ENSG00000169432': 'SCN9A',\n",
" 'ENSG00000235335': 'AC016723.4',\n",
" 'ENSG00000163072': 'NOSTRIN',\n",
" 'ENSG00000152253': 'SPC25',\n",
" 'ENSG00000073734': 'ABCB11',\n",
" 'ENSG00000073737': 'DHRS9',\n",
" 'ENSG00000239474': 'KLHL41',\n",
" 'ENSG00000154479': 'CCDC173',\n",
" 'ENSG00000231898': 'AC012594.1',\n",
" 'ENSG00000239467': 'AC007405.6',\n",
" 'ENSG00000204334': 'ERICH2',\n",
" 'ENSG00000128683': 'GAD1',\n",
" 'ENSG00000198586': 'TLK1',\n",
" 'ENSG00000228389': 'AC068039.4',\n",
" 'ENSG00000115844': 'DLX2',\n",
" 'ENSG00000232788': 'AC078883.3',\n",
" 'ENSG00000144354': 'CDCA7',\n",
" 'ENSG00000271151': 'RP11-394I13.2',\n",
" 'ENSG00000138433': 'CIR1',\n",
" 'ENSG00000224189': 'HOXD-AS1',\n",
" 'ENSG00000170144': 'HNRNPA3',\n",
" 'ENSG00000116044': 'NFE2L2',\n",
" 'ENSG00000155657': 'TTN',\n",
" 'ENSG00000271401': 'RP11-171I2.3',\n",
" 'ENSG00000115232': 'ITGA4',\n",
" 'ENSG00000138434': 'SSFA2',\n",
" 'ENSG00000077232': 'DNAJC10',\n",
" 'ENSG00000231646': 'AC008174.3',\n",
" 'ENSG00000138448': 'ITGAV',\n",
" 'ENSG00000003436': 'TFPI',\n",
" 'ENSG00000138449': 'SLC40A1',\n",
" 'ENSG00000128694': 'OSGEPL1',\n",
" 'ENSG00000273240': 'RP11-455J20.3',\n",
" 'ENSG00000187699': 'C2orf88',\n",
" 'ENSG00000151689': 'INPP1',\n",
" 'ENSG00000151690': 'MFSD6',\n",
" 'ENSG00000233654': 'AC093388.3',\n",
" 'ENSG00000138386': 'NAB1',\n",
" 'ENSG00000235852': 'AC005540.3',\n",
" 'ENSG00000115419': 'GLS',\n",
" 'ENSG00000115415': 'STAT1',\n",
" 'ENSG00000173559': 'NABP1',\n",
" 'ENSG00000235056': 'AC010983.1',\n",
" 'ENSG00000271893': 'RP11-762E8.1',\n",
" 'ENSG00000234919': 'AC064834.3',\n",
" 'ENSG00000196950': 'SLC39A10',\n",
" 'ENSG00000081320': 'STK17B',\n",
" 'ENSG00000272211': 'RP11-347P5.1',\n",
" 'ENSG00000229056': 'AC020571.3',\n",
" 'ENSG00000115524': 'SF3B1',\n",
" 'ENSG00000144381': 'HSPD1',\n",
" 'ENSG00000115541': 'HSPE1',\n",
" 'ENSG00000162944': 'RFTN2',\n",
" 'ENSG00000196141': 'SPATS2L',\n",
" 'ENSG00000163535': 'SGOL2',\n",
" 'ENSG00000260006': 'RP11-469M7.1',\n",
" 'ENSG00000013441': 'CLK1',\n",
" 'ENSG00000003402': 'CFLAR',\n",
" 'ENSG00000003400': 'CASP10',\n",
" 'ENSG00000064012': 'CASP8',\n",
" 'ENSG00000115993': 'TRAK2',\n",
" 'ENSG00000138395': 'CDK15',\n",
" 'ENSG00000273209': 'RP11-107N15.1',\n",
" 'ENSG00000155760': 'FZD7',\n",
" 'ENSG00000204217': 'BMPR2',\n",
" 'ENSG00000138380': 'CARF',\n",
" 'ENSG00000138443': 'ABI2',\n",
" 'ENSG00000256458': 'RP11-363J17.1',\n",
" 'ENSG00000227946': 'AC007383.3',\n",
" 'ENSG00000204186': 'ZDBF2',\n",
" 'ENSG00000118260': 'CREB1',\n",
" 'ENSG00000244567': 'AC096772.6',\n",
" 'ENSG00000138413': 'IDH1',\n",
" 'ENSG00000144445': 'KANSL1L',\n",
" 'ENSG00000229127': 'AC007038.7',\n",
" 'ENSG00000030419': 'IKZF2',\n",
" 'ENSG00000229267': 'AC072062.1',\n",
" 'ENSG00000163449': 'TMEM169',\n",
" 'ENSG00000079246': 'XRCC5',\n",
" 'ENSG00000197756': 'RPL37A',\n",
" 'ENSG00000115457': 'IGFBP2',\n",
" 'ENSG00000273361': 'RP11-378A13.2',\n",
" 'ENSG00000135913': 'USP37',\n",
" 'ENSG00000135929': 'CYP27A1',\n",
" 'ENSG00000171450': 'CDK5R2',\n",
" 'ENSG00000163497': 'FEV',\n",
" 'ENSG00000181378': 'CCDC108',\n",
" 'ENSG00000115657': 'ABCB6',\n",
" 'ENSG00000135924': 'DNAJB2',\n",
" 'ENSG00000144591': 'GMPPA',\n",
" 'ENSG00000072182': 'ASIC4',\n",
" 'ENSG00000268896': 'RP11-256I23.1',\n",
" 'ENSG00000123999': 'INHA',\n",
" 'ENSG00000114923': 'SLC4A3',\n",
" 'ENSG00000116120': 'FARSB',\n",
" 'ENSG00000123983': 'ACSL3',\n",
" 'ENSG00000152049': 'KCNE4',\n",
" 'ENSG00000085449': 'WDFY1',\n",
" 'ENSG00000169047': 'IRS1',\n",
" 'ENSG00000236432': 'AC097662.2',\n",
" 'ENSG00000153827': 'TRIP12',\n",
" 'ENSG00000135899': 'SP110',\n",
" 'ENSG00000067066': 'SP100',\n",
" 'ENSG00000226125': 'AC098823.3',\n",
" 'ENSG00000135916': 'ITM2C',\n",
" 'ENSG00000135898': 'GPR55',\n",
" 'ENSG00000115053': 'NCL',\n",
" 'ENSG00000187514': 'PTMA',\n",
" 'ENSG00000221944': 'TIGD1',\n",
" 'ENSG00000115474': 'KCNJ13',\n",
" 'ENSG00000182600': 'C2orf82',\n",
" 'ENSG00000168918': 'INPP5D',\n",
" 'ENSG00000130561': 'SAG',\n",
" 'ENSG00000123485': 'HJURP',\n",
" 'ENSG00000232893': 'AC019068.2',\n",
" 'ENSG00000227252': 'AC105760.2',\n",
" 'ENSG00000234949': 'AC104667.3',\n",
" 'ENSG00000168427': 'KLHL30',\n",
" 'ENSG00000144485': 'HES6',\n",
" 'ENSG00000132326': 'PER2',\n",
" 'ENSG00000204104': 'TRAF3IP1',\n",
" 'ENSG00000063660': 'GPC1',\n",
" 'ENSG00000260942': 'CAPN10-AS1',\n",
" 'ENSG00000178623': 'GPR35',\n",
" 'ENSG00000219159': 'AC011298.2',\n",
" 'ENSG00000162804': 'SNED1',\n",
" 'ENSG00000115677': 'HDLBP',\n",
" 'ENSG00000204099': 'NEU4',\n",
" 'ENSG00000237940': 'AC093642.3',\n",
" 'ENSG00000091181': 'IL5RA',\n",
" 'ENSG00000150995': 'ITPR1',\n",
" 'ENSG00000235831': 'BHLHE40-AS1',\n",
" 'ENSG00000134107': 'BHLHE40',\n",
" 'ENSG00000180914': 'OXTR',\n",
" 'ENSG00000070950': 'RAD18',\n",
" 'ENSG00000196220': 'SRGAP3',\n",
" 'ENSG00000206573': 'SETD5-AS1',\n",
" 'ENSG00000168137': 'SETD5',\n",
" 'ENSG00000250151': 'ARPC4-TTLL3',\n",
" 'ENSG00000214021': 'TTLL3',\n",
" 'ENSG00000163703': 'CRELD1',\n",
" 'ENSG00000163704': 'PRRT3',\n",
" 'ENSG00000269982': 'RP11-1020A11.2',\n",
" 'ENSG00000206567': 'AC022007.5',\n",
" 'ENSG00000134070': 'IRAK2',\n",
" 'ENSG00000157017': 'GHRL',\n",
" 'ENSG00000144560': 'VGLL4',\n",
" 'ENSG00000144713': 'RPL32',\n",
" 'ENSG00000132182': 'NUP210',\n",
" 'ENSG00000163517': 'HDAC11',\n",
" 'ENSG00000163520': 'FBLN2',\n",
" 'ENSG00000228242': 'AC093495.4',\n",
" 'ENSG00000131389': 'SLC6A6',\n",
" 'ENSG00000225733': 'FGD5-AS1',\n",
" 'ENSG00000224660': 'SH3BP5-AS1',\n",
" 'ENSG00000131370': 'SH3BP5',\n",
" 'ENSG00000144597': 'EAF1',\n",
" 'ENSG00000206560': 'ANKRD28',\n",
" 'ENSG00000131378': 'RFTN1',\n",
" 'ENSG00000092345': 'DAZL',\n",
" 'ENSG00000131374': 'TBC1D5',\n",
" 'ENSG00000182568': 'SATB1',\n",
" 'ENSG00000183960': 'KCNH8',\n",
" 'ENSG00000183977': 'PP2D1',\n",
" 'ENSG00000129810': 'SGOL1',\n",
" 'ENSG00000223791': 'UBE2E1-AS1',\n",
" 'ENSG00000224074': 'LINC00691',\n",
" 'ENSG00000151090': 'THRB',\n",
" 'ENSG00000272554': 'RP11-317L10.1',\n",
" ...}"
]
},
"execution_count": 12,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"map_dict"
]
},
{
"cell_type": "code",
"execution_count": 13,
"id": "7fb2df7d",
"metadata": {},
"outputs": [],
"source": [
"import pickle\n",
"\n",
"# Open the file in write binary ('wb') mode and save the data\n",
"with open(\"./map_info_gene_adamson.pkl\", 'wb') as file:\n",
" pickle.dump(map_dict, file)"
]
},
{
"cell_type": "code",
"execution_count": 10,
"id": "532b0a51",
"metadata": {},
"outputs": [],
"source": [
"data = pd.read_csv(\"/gpfs/radev/project/zhao/hs2234/evox/QA/gene_perturb/qa/replogle_psa_single_qa.csv\")['question'].values"
]
},
{
"cell_type": "code",
"execution_count": 12,
"id": "494bad0d",
"metadata": {},
"outputs": [],
"source": [
"# for i in data:\n",
"# if 'K562' not in i:\n",
"# print(i)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "2148aa4c",
"metadata": {},
"outputs": [],
"source": [
"\"/gpfs/radev/project/zhao/tl688/data/replogle_rpe1_essential/perturb_processed.h5ad\""
]
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.13"
}
},
"nbformat": 4,
"nbformat_minor": 5
}
|