Update load.py
Browse files
load.py
CHANGED
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@@ -41,7 +41,7 @@ class MSSSegmentationModel(pl.LightningModule):
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def get_spline_window(size: int, power: int = 2) -> np.ndarray:
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"""
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intersection = np.hanning(size)
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window_2d = np.outer(intersection, intersection)
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return (window_2d ** power).astype(np.float32)
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@@ -52,22 +52,26 @@ def apply_physical_rules(
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image: np.ndarray,
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merge_clouds: bool = False,
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) -> np.ndarray:
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-
"""
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saturation_threshold = 0.35
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pred = pred.copy()
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nodata_mask = np.all(image == 0, axis=0)
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bright_b0 = image[0] > saturation_threshold
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bright_b1 = image[1] > saturation_threshold * 0.80
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saturated_mask = bright_b0 & bright_b1
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if merge_clouds:
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pred[saturated_mask] = 1
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else:
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pred[saturated_mask] = 2
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pred[nodata_mask] = 0
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return pred
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@@ -121,8 +125,8 @@ def compiled_model(
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def predict_large(
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image: np.ndarray,
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model: nn.Module,
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chunk_size: int = 512,
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overlap: int = None,
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batch_size: int = 1,
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device: str = "cpu",
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merge_clouds: bool = False,
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@@ -130,7 +134,7 @@ def predict_large(
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**kwargs
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) -> np.ndarray:
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"""
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Predict on
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Args:
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image: Input image (C, H, W) in reflectance [0, 1]
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@@ -140,7 +144,7 @@ def predict_large(
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batch_size: Tiles per batch (default: 1)
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device: 'cpu' or 'cuda'
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merge_clouds: If True, merge thin+thick into single cloud class
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apply_rules: If True, apply physical rules for bright clouds
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Returns:
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Predicted class labels (H, W)
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@@ -150,7 +154,7 @@ def predict_large(
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model.eval()
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model.to(device)
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# Get merge_clouds from model if
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if not hasattr(model, 'merge_clouds'):
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model.merge_clouds = merge_clouds
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else:
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@@ -158,23 +162,22 @@ def predict_large(
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C, H, W = image.shape
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# Set default overlap
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if overlap is None:
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overlap = chunk_size // 2
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# Direct inference
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if H <= chunk_size and W <= chunk_size:
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with torch.no_grad():
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img_tensor = torch.from_numpy(image).unsqueeze(0).float().to(device)
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logits = model(img_tensor)
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if merge_clouds:
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# Merge thin+thick clouds into single cloud class
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probs = torch.softmax(logits, dim=1)
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probs_merged = torch.zeros(1, 3, H, W, device=device)
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probs_merged[:, 0] = probs[:, 0]
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probs_merged[:, 1] = probs[:, 1] + probs[:, 2]
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probs_merged[:, 2] = probs[:, 3]
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pred = probs_merged.argmax(1).squeeze().cpu().numpy().astype(np.uint8)
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else:
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pred = logits.argmax(1).squeeze().cpu().numpy().astype(np.uint8)
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@@ -184,14 +187,23 @@ def predict_large(
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return pred
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#
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step = chunk_size - overlap
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half_tile = chunk_size // 2
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#
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image_padded = np.pad(
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image,
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((0, 0), (
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mode="reflect"
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)
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@@ -206,15 +218,14 @@ def predict_large(
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window = get_spline_window(chunk_size, power=2)
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# Generate tile coordinates
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coords = [
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for
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]
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# Process tiles in batches
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with torch.no_grad():
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for i in
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batch_coords = coords[i:i + batch_size]
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# Extract tiles
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@@ -237,16 +248,15 @@ def predict_large(
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weight_sum = np.maximum(weight_sum, 1e-8)
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probs_final = probs_sum / weight_sum
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# Remove padding
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probs_final = probs_final[:,
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# Get final prediction
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if merge_clouds:
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# Merge thin+thick clouds into single cloud class
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probs_merged = np.zeros((3, H, W), dtype=np.float32)
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probs_merged[0] = probs_final[0]
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probs_merged[1] = probs_final[1] + probs_final[2]
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probs_merged[2] = probs_final[3]
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pred = np.argmax(probs_merged, axis=0).astype(np.uint8)
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else:
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pred = np.argmax(probs_final, axis=0).astype(np.uint8)
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@@ -297,16 +307,19 @@ def display_results(
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fig, axes = plt.subplots(1, 2, figsize=(12, 5))
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rgb = np.stack([image[1], image[0], image[2]], axis=-1)
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rgb = np.clip(rgb * 3, 0, 1)
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axes[0].imshow(rgb)
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axes[0].set_title("MSS RGB Composite")
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axes[0].axis('off')
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im = axes[1].imshow(prediction, cmap=cmap, vmin=0, vmax=len(labels)-1)
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axes[1].set_title("Cloud Detection")
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axes[1].axis('off')
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cbar = plt.colorbar(im, ax=axes[1], ticks=range(len(labels)))
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cbar.ax.set_yticklabels(labels)
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def get_spline_window(size: int, power: int = 2) -> np.ndarray:
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"""Hann window for smooth blending."""
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intersection = np.hanning(size)
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window_2d = np.outer(intersection, intersection)
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return (window_2d ** power).astype(np.float32)
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image: np.ndarray,
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merge_clouds: bool = False,
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) -> np.ndarray:
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"""Apply physical rules for saturated thick clouds."""
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saturation_threshold = 0.35
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pred = pred.copy()
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# Nodata mask
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nodata_mask = np.all(image == 0, axis=0)
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# Saturated clouds (high values in visible bands)
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bright_b0 = image[0] > saturation_threshold
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bright_b1 = image[1] > saturation_threshold * 0.80
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saturated_mask = bright_b0 & bright_b1
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# Assign thick cloud class
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if merge_clouds:
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pred[saturated_mask] = 1 # Cloud (merged)
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else:
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pred[saturated_mask] = 2 # Thick cloud
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# Set nodata to clear
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pred[nodata_mask] = 0
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return pred
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def predict_large(
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image: np.ndarray,
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model: nn.Module,
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chunk_size: int = 512,
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overlap: int = None,
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batch_size: int = 1,
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device: str = "cpu",
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merge_clouds: bool = False,
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**kwargs
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) -> np.ndarray:
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"""
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Predict on images of any size using sliding window with smooth blending.
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Args:
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image: Input image (C, H, W) in reflectance [0, 1]
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batch_size: Tiles per batch (default: 1)
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device: 'cpu' or 'cuda'
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merge_clouds: If True, merge thin+thick into single cloud class
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apply_rules: If True, apply physical rules for bright clouds
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Returns:
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Predicted class labels (H, W)
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model.eval()
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model.to(device)
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# Get merge_clouds setting from model if available
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if not hasattr(model, 'merge_clouds'):
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model.merge_clouds = merge_clouds
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else:
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C, H, W = image.shape
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# Set default overlap
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if overlap is None:
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overlap = chunk_size // 2
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# Direct inference for small images
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if H <= chunk_size and W <= chunk_size:
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with torch.no_grad():
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img_tensor = torch.from_numpy(image).unsqueeze(0).float().to(device)
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logits = model(img_tensor)
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if merge_clouds:
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probs = torch.softmax(logits, dim=1)
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probs_merged = torch.zeros(1, 3, H, W, device=device)
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probs_merged[:, 0] = probs[:, 0]
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probs_merged[:, 1] = probs[:, 1] + probs[:, 2]
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probs_merged[:, 2] = probs[:, 3]
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pred = probs_merged.argmax(1).squeeze().cpu().numpy().astype(np.uint8)
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else:
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pred = logits.argmax(1).squeeze().cpu().numpy().astype(np.uint8)
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return pred
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# === SLIDING WINDOW FOR LARGER IMAGES ===
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# Calculate padding needed to make image divisible by step
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step = chunk_size - overlap
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# Padding to ensure tiles cover the entire image
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pad_h = (step - (H % step)) % step
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pad_w = (step - (W % step)) % step
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# Add extra overlap padding on all sides for smooth edges
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pad_h += overlap
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pad_w += overlap
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# Pad image
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image_padded = np.pad(
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image,
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((0, 0), (overlap // 2, pad_h - overlap // 2), (overlap // 2, pad_w - overlap // 2)),
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mode="reflect"
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)
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window = get_spline_window(chunk_size, power=2)
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# Generate tile coordinates
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coords = []
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for r in range(0, H_pad - chunk_size + 1, step):
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for c in range(0, W_pad - chunk_size + 1, step):
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coords.append((r, c))
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# Process tiles in batches
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with torch.no_grad():
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for i in range(0, len(coords), batch_size):
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batch_coords = coords[i:i + batch_size]
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# Extract tiles
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weight_sum = np.maximum(weight_sum, 1e-8)
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probs_final = probs_sum / weight_sum
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# Remove padding to get back to original size
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probs_final = probs_final[:, overlap // 2:overlap // 2 + H, overlap // 2:overlap // 2 + W]
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# Get final prediction
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if merge_clouds:
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probs_merged = np.zeros((3, H, W), dtype=np.float32)
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probs_merged[0] = probs_final[0]
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probs_merged[1] = probs_final[1] + probs_final[2]
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probs_merged[2] = probs_final[3]
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pred = np.argmax(probs_merged, axis=0).astype(np.uint8)
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else:
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pred = np.argmax(probs_final, axis=0).astype(np.uint8)
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fig, axes = plt.subplots(1, 2, figsize=(12, 5))
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# RGB composite
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rgb = np.stack([image[1], image[0], image[2]], axis=-1)
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rgb = np.clip(rgb * 3, 0, 1)
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axes[0].imshow(rgb)
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axes[0].set_title("MSS RGB Composite")
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axes[0].axis('off')
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# Prediction
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im = axes[1].imshow(prediction, cmap=cmap, vmin=0, vmax=len(labels)-1)
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axes[1].set_title("Cloud Detection")
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axes[1].axis('off')
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# Colorbar
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cbar = plt.colorbar(im, ax=axes[1], ticks=range(len(labels)))
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cbar.ax.set_yticklabels(labels)
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