Update load.py
Browse files
load.py
CHANGED
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@@ -7,16 +7,11 @@ import torch
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import torch.nn as nn
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import numpy as np
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from pathlib import Path
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-
from typing import Tuple, Optional
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import pytorch_lightning as pl
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import segmentation_models_pytorch as smp
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from tqdm import tqdm
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# ============================================================================
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# MODEL DEFINITION (copied from your model.py)
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# ============================================================================
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class MSSSegmentationModel(pl.LightningModule):
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"""UNet para cloud segmentation en MSS."""
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@@ -45,12 +40,8 @@ class MSSSegmentationModel(pl.LightningModule):
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return self.model(x)
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# ============================================================================
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# INFERENCE UTILITIES
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# ============================================================================
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def get_spline_window(size: int, power: int = 2) -> np.ndarray:
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"""
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intersection = np.hanning(size)
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window_2d = np.outer(intersection, intersection)
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return (window_2d ** power).astype(np.float32)
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@@ -60,42 +51,28 @@ def apply_physical_rules(
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pred: np.ndarray,
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image: np.ndarray,
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merge_clouds: bool = False,
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saturation_threshold: float = 0.35,
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) -> np.ndarray:
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"""
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Args:
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pred: Predicted classes (H, W)
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image: Input image (4, H, W) in reflectance [0, 1]
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merge_clouds: If True, merge thin+thick into single cloud class
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saturation_threshold: Threshold for detecting saturated bright clouds
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"""
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pred = pred.copy()
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# Mask nodata pixels
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nodata_mask = np.all(image == 0, axis=0)
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pred[nodata_mask] = 0
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# Detect very bright pixels (likely thick clouds)
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bright_b0 = image[0] > saturation_threshold
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bright_b1 = image[1] > saturation_threshold * 0.80
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saturated_mask = bright_b0 & bright_b1
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if merge_clouds:
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# Set to cloud (1)
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pred[saturated_mask] = 1
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else:
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# Set to thick cloud (2)
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pred[saturated_mask] = 2
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return pred
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# ============================================================================
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# MLSTAC-COMPATIBLE FUNCTIONS
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# ============================================================================
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def compiled_model(
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model_dir: Path,
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stac_item=None,
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@@ -110,20 +87,18 @@ def compiled_model(
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model_dir: Directory containing the .ckpt file
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stac_item: STAC item metadata (optional)
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device: 'cpu' or 'cuda'
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merge_clouds: If True, output
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If False, output
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Returns:
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Loaded model in eval mode
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"""
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# Find checkpoint file
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ckpt_files = list(model_dir.glob("*.ckpt"))
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if not ckpt_files:
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raise FileNotFoundError(f"No .ckpt file found in {model_dir}")
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ckpt_path = ckpt_files[0]
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# Load model
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model = MSSSegmentationModel.load_from_checkpoint(
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ckpt_path,
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map_location=device
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@@ -131,11 +106,9 @@ def compiled_model(
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model.eval()
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model.to(device)
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# Disable gradients
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for param in model.parameters():
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param.requires_grad = False
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# Store merge_clouds flag for predict_large
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model.merge_clouds = merge_clouds
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print(f"✅ Model loaded from {ckpt_path.name}")
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@@ -152,9 +125,8 @@ def predict_large(
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overlap: int = 256,
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batch_size: int = 1,
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device: str = "cpu",
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-
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apply_rules: bool =
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saturation_threshold: float = 0.35,
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**kwargs
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) -> np.ndarray:
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"""
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@@ -163,53 +135,51 @@ def predict_large(
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Args:
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image: Input image (C, H, W) in reflectance [0, 1]
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model: Loaded model from compiled_model()
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chunk_size: Size of inference tiles (default:
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overlap: Overlap between tiles
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batch_size:
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device: 'cpu' or 'cuda'
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-
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apply_rules:
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saturation_threshold: Threshold for detecting bright clouds
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Returns:
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Predicted class labels (H, W)
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- If merge_clouds=False: 0=clear, 1=thin, 2=thick, 3=shadow
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- If merge_clouds=True: 0=clear, 1=cloud, 2=shadow
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"""
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model.eval()
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model.to(device)
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C, H, W = image.shape
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# Direct inference for small images
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if H <= chunk_size and W <= chunk_size:
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with torch.no_grad():
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img_tensor = torch.from_numpy(image).unsqueeze(0).float().to(device)
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logits = model(img_tensor)
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if merge_clouds:
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# Merge thin(1) + thick(2) probabilities
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probs = torch.softmax(logits, dim=1)
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probs_merged = torch.zeros(1, 3, H, W, device=device)
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probs_merged[:, 0] = probs[:, 0]
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probs_merged[:, 1] = probs[:, 1] + probs[:, 2]
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probs_merged[:, 2] = probs[:, 3]
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pred = probs_merged.argmax(1).squeeze().cpu().numpy().astype(np.uint8)
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else:
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pred = logits.argmax(1).squeeze().cpu().numpy().astype(np.uint8)
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if apply_rules:
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pred = apply_physical_rules(pred, image, merge_clouds
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return pred
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# Sliding window for large images
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step = chunk_size - overlap
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half_tile = chunk_size // 2
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# Pad image
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image_padded = np.pad(
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image,
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((0, 0), (half_tile, half_tile + chunk_size), (half_tile, half_tile + chunk_size)),
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@@ -218,82 +188,60 @@ def predict_large(
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_, H_pad, W_pad = image_padded.shape
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# Initialize accumulators - ALWAYS 4 classes, merge at the end if needed
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num_classes = 4
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probs_sum = np.zeros((num_classes, H_pad, W_pad), dtype=np.float32)
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weight_sum = np.zeros((H_pad, W_pad), dtype=np.float32)
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# Blending window
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window = get_spline_window(chunk_size, power=2)
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# Generate tile coordinates
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coords = [
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(r, c)
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for r in range(0, H_pad - chunk_size + 1, step)
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for c in range(0, W_pad - chunk_size + 1, step)
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]
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# Process tiles in batches
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with torch.no_grad():
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for i in tqdm(range(0, len(coords), batch_size), desc=" Tiles", leave=False, disable=True):
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batch_coords = coords[i:i + batch_size]
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# Extract tiles
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tiles = np.stack([
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image_padded[:, r:r + chunk_size, c:c + chunk_size]
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for r, c in batch_coords
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])
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# Inference
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tiles_tensor = torch.from_numpy(tiles).float().to(device)
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logits = model(tiles_tensor)
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probs = torch.softmax(logits, dim=1).cpu().numpy()
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# Accumulate with blending - ALWAYS accumulate 4 classes
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for j, (r, c) in enumerate(batch_coords):
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probs_sum[:, r:r + chunk_size, c:c + chunk_size] += probs[j] * window
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weight_sum[r:r + chunk_size, c:c + chunk_size] += window
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# Normalize
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weight_sum = np.maximum(weight_sum, 1e-8)
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probs_final = probs_sum / weight_sum
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# Crop to original size
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probs_final = probs_final[:, half_tile:half_tile + H, half_tile:half_tile + W]
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# Merge classes if requested - AFTER normalization
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if merge_clouds:
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probs_merged = np.zeros((3, H, W), dtype=np.float32)
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probs_merged[0] = probs_final[0]
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probs_merged[1] = probs_final[1] + probs_final[2]
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probs_merged[2] = probs_final[3]
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pred = np.argmax(probs_merged, axis=0).astype(np.uint8)
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else:
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pred = np.argmax(probs_final, axis=0).astype(np.uint8)
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# Apply physical rules
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if apply_rules:
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pred = apply_physical_rules(pred, image, merge_clouds
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return pred
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# ============================================================================
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# OPTIONAL: EXAMPLE DATA AND VISUALIZATION
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# ============================================================================
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def example_data(model_dir: Path, **kwargs):
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"""
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Load example data for testing (optional function).
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Returns:
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Example MSS image as numpy array (4, H, W)
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"""
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# This is optional - you can provide a small example .npy file
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example_path = model_dir / "example_mss.npy"
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if not example_path.exists():
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# Return synthetic data if no example file
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print("⚠️ No example data found, generating synthetic")
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return np.random.rand(4, 512, 512).astype(np.float32) * 0.5
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@@ -307,15 +255,7 @@ def display_results(
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stac_item=None,
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**kwargs
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):
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"""
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Display prediction results (optional visualization function).
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Args:
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model_dir: Model directory
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image: Input image (4, H, W)
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prediction: Predicted classes (H, W)
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stac_item: STAC metadata
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"""
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try:
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import matplotlib.pyplot as plt
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from matplotlib.colors import ListedColormap
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merge_clouds = prediction.max() <= 2
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# Color maps
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if merge_clouds:
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colors = ['#2E7D32', '#FFFFFF', '#424242']
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labels = ['Clear', 'Cloud', 'Shadow']
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else:
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colors = ['#2E7D32', '#B3E5FC', '#FFFFFF', '#424242']
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@@ -335,22 +274,18 @@ def display_results(
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cmap = ListedColormap(colors)
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# Plot
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fig, axes = plt.subplots(1, 2, figsize=(12, 5))
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# RGB composite (use bands 1, 0, 2 as RGB approximation)
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rgb = np.stack([image[1], image[0], image[2]], axis=-1)
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rgb = np.clip(rgb * 3, 0, 1)
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axes[0].imshow(rgb)
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axes[0].set_title("MSS RGB Composite")
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axes[0].axis('off')
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# Prediction
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im = axes[1].imshow(prediction, cmap=cmap, vmin=0, vmax=len(labels)-1)
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axes[1].set_title("Cloud Detection")
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axes[1].axis('off')
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# Colorbar
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cbar = plt.colorbar(im, ax=axes[1], ticks=range(len(labels)))
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cbar.ax.set_yticklabels(labels)
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import torch.nn as nn
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import numpy as np
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from pathlib import Path
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import pytorch_lightning as pl
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import segmentation_models_pytorch as smp
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from tqdm import tqdm
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class MSSSegmentationModel(pl.LightningModule):
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"""UNet para cloud segmentation en MSS."""
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return self.model(x)
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def get_spline_window(size: int, power: int = 2) -> np.ndarray:
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"""Ventana Hann 2D para blending suave."""
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intersection = np.hanning(size)
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window_2d = np.outer(intersection, intersection)
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return (window_2d ** power).astype(np.float32)
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pred: np.ndarray,
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image: np.ndarray,
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merge_clouds: bool = False,
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) -> np.ndarray:
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"""Regla física para nubes gruesas saturadas."""
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saturation_threshold = 0.35
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pred = pred.copy()
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nodata_mask = np.all(image == 0, axis=0)
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bright_b0 = image[0] > saturation_threshold
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bright_b1 = image[1] > saturation_threshold * 0.80
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saturated_mask = bright_b0 & bright_b1
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if merge_clouds:
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pred[saturated_mask] = 1
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else:
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pred[saturated_mask] = 2
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pred[nodata_mask] = 0
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return pred
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def compiled_model(
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model_dir: Path,
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stac_item=None,
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model_dir: Directory containing the .ckpt file
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stac_item: STAC item metadata (optional)
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device: 'cpu' or 'cuda'
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merge_clouds: If True, output 3 classes (clear, cloud, shadow)
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If False, output 4 classes (clear, thin, thick, shadow)
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Returns:
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Loaded model in eval mode
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"""
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ckpt_files = list(model_dir.glob("*.ckpt"))
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if not ckpt_files:
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raise FileNotFoundError(f"No .ckpt file found in {model_dir}")
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ckpt_path = ckpt_files[0]
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model = MSSSegmentationModel.load_from_checkpoint(
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ckpt_path,
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map_location=device
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model.eval()
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model.to(device)
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for param in model.parameters():
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param.requires_grad = False
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model.merge_clouds = merge_clouds
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print(f"✅ Model loaded from {ckpt_path.name}")
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overlap: int = 256,
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batch_size: int = 1,
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device: str = "cpu",
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merge_clouds: bool = False,
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apply_rules: bool = False,
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**kwargs
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) -> np.ndarray:
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"""
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Args:
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image: Input image (C, H, W) in reflectance [0, 1]
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model: Loaded model from compiled_model()
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chunk_size: Size of inference tiles (default: 512)
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overlap: Overlap between tiles (default: 256)
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batch_size: Tiles per batch (default: 1)
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device: 'cpu' or 'cuda'
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merge_clouds: If True, merge thin+thick into single cloud class
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apply_rules: If True, apply physical rules for bright clouds (default: False)
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Returns:
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Predicted class labels (H, W)
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- If merge_clouds=False: 0=clear, 1=thin, 2=thick, 3=shadow
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- If merge_clouds=True: 0=clear, 1=cloud, 2=shadow
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"""
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model.eval()
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model.to(device)
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if not hasattr(model, 'merge_clouds'):
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model.merge_clouds = merge_clouds
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else:
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merge_clouds = model.merge_clouds
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C, H, W = image.shape
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if H <= chunk_size and W <= chunk_size:
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with torch.no_grad():
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img_tensor = torch.from_numpy(image).unsqueeze(0).float().to(device)
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logits = model(img_tensor)
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if merge_clouds:
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probs = torch.softmax(logits, dim=1)
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probs_merged = torch.zeros(1, 3, H, W, device=device)
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| 168 |
+
probs_merged[:, 0] = probs[:, 0]
|
| 169 |
+
probs_merged[:, 1] = probs[:, 1] + probs[:, 2]
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| 170 |
+
probs_merged[:, 2] = probs[:, 3]
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| 171 |
pred = probs_merged.argmax(1).squeeze().cpu().numpy().astype(np.uint8)
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| 172 |
else:
|
| 173 |
pred = logits.argmax(1).squeeze().cpu().numpy().astype(np.uint8)
|
| 174 |
|
| 175 |
if apply_rules:
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| 176 |
+
pred = apply_physical_rules(pred, image, merge_clouds)
|
| 177 |
|
| 178 |
return pred
|
| 179 |
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|
| 180 |
step = chunk_size - overlap
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| 181 |
half_tile = chunk_size // 2
|
| 182 |
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|
| 183 |
image_padded = np.pad(
|
| 184 |
image,
|
| 185 |
((0, 0), (half_tile, half_tile + chunk_size), (half_tile, half_tile + chunk_size)),
|
|
|
|
| 188 |
|
| 189 |
_, H_pad, W_pad = image_padded.shape
|
| 190 |
|
|
|
|
| 191 |
num_classes = 4
|
| 192 |
probs_sum = np.zeros((num_classes, H_pad, W_pad), dtype=np.float32)
|
| 193 |
weight_sum = np.zeros((H_pad, W_pad), dtype=np.float32)
|
| 194 |
|
|
|
|
| 195 |
window = get_spline_window(chunk_size, power=2)
|
| 196 |
|
|
|
|
| 197 |
coords = [
|
| 198 |
(r, c)
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| 199 |
for r in range(0, H_pad - chunk_size + 1, step)
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| 200 |
for c in range(0, W_pad - chunk_size + 1, step)
|
| 201 |
]
|
| 202 |
|
|
|
|
| 203 |
with torch.no_grad():
|
| 204 |
for i in tqdm(range(0, len(coords), batch_size), desc=" Tiles", leave=False, disable=True):
|
| 205 |
batch_coords = coords[i:i + batch_size]
|
| 206 |
|
|
|
|
| 207 |
tiles = np.stack([
|
| 208 |
image_padded[:, r:r + chunk_size, c:c + chunk_size]
|
| 209 |
for r, c in batch_coords
|
| 210 |
])
|
| 211 |
|
|
|
|
| 212 |
tiles_tensor = torch.from_numpy(tiles).float().to(device)
|
| 213 |
logits = model(tiles_tensor)
|
| 214 |
probs = torch.softmax(logits, dim=1).cpu().numpy()
|
| 215 |
|
|
|
|
| 216 |
for j, (r, c) in enumerate(batch_coords):
|
| 217 |
probs_sum[:, r:r + chunk_size, c:c + chunk_size] += probs[j] * window
|
| 218 |
weight_sum[r:r + chunk_size, c:c + chunk_size] += window
|
| 219 |
|
|
|
|
| 220 |
weight_sum = np.maximum(weight_sum, 1e-8)
|
| 221 |
probs_final = probs_sum / weight_sum
|
| 222 |
|
|
|
|
| 223 |
probs_final = probs_final[:, half_tile:half_tile + H, half_tile:half_tile + W]
|
| 224 |
|
|
|
|
| 225 |
if merge_clouds:
|
| 226 |
probs_merged = np.zeros((3, H, W), dtype=np.float32)
|
| 227 |
+
probs_merged[0] = probs_final[0]
|
| 228 |
+
probs_merged[1] = probs_final[1] + probs_final[2]
|
| 229 |
+
probs_merged[2] = probs_final[3]
|
| 230 |
pred = np.argmax(probs_merged, axis=0).astype(np.uint8)
|
| 231 |
else:
|
| 232 |
pred = np.argmax(probs_final, axis=0).astype(np.uint8)
|
| 233 |
|
|
|
|
| 234 |
if apply_rules:
|
| 235 |
+
pred = apply_physical_rules(pred, image, merge_clouds)
|
| 236 |
|
| 237 |
return pred
|
| 238 |
|
| 239 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 240 |
def example_data(model_dir: Path, **kwargs):
|
| 241 |
+
"""Load example data for testing."""
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 242 |
example_path = model_dir / "example_mss.npy"
|
| 243 |
|
| 244 |
if not example_path.exists():
|
|
|
|
| 245 |
print("⚠️ No example data found, generating synthetic")
|
| 246 |
return np.random.rand(4, 512, 512).astype(np.float32) * 0.5
|
| 247 |
|
|
|
|
| 255 |
stac_item=None,
|
| 256 |
**kwargs
|
| 257 |
):
|
| 258 |
+
"""Display prediction results."""
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 259 |
try:
|
| 260 |
import matplotlib.pyplot as plt
|
| 261 |
from matplotlib.colors import ListedColormap
|
|
|
|
| 265 |
|
| 266 |
merge_clouds = prediction.max() <= 2
|
| 267 |
|
|
|
|
| 268 |
if merge_clouds:
|
| 269 |
+
colors = ['#2E7D32', '#FFFFFF', '#424242']
|
| 270 |
labels = ['Clear', 'Cloud', 'Shadow']
|
| 271 |
else:
|
| 272 |
colors = ['#2E7D32', '#B3E5FC', '#FFFFFF', '#424242']
|
|
|
|
| 274 |
|
| 275 |
cmap = ListedColormap(colors)
|
| 276 |
|
|
|
|
| 277 |
fig, axes = plt.subplots(1, 2, figsize=(12, 5))
|
| 278 |
|
|
|
|
| 279 |
rgb = np.stack([image[1], image[0], image[2]], axis=-1)
|
| 280 |
+
rgb = np.clip(rgb * 3, 0, 1)
|
| 281 |
axes[0].imshow(rgb)
|
| 282 |
axes[0].set_title("MSS RGB Composite")
|
| 283 |
axes[0].axis('off')
|
| 284 |
|
|
|
|
| 285 |
im = axes[1].imshow(prediction, cmap=cmap, vmin=0, vmax=len(labels)-1)
|
| 286 |
axes[1].set_title("Cloud Detection")
|
| 287 |
axes[1].axis('off')
|
| 288 |
|
|
|
|
| 289 |
cbar = plt.colorbar(im, ax=axes[1], ticks=range(len(labels)))
|
| 290 |
cbar.ax.set_yticklabels(labels)
|
| 291 |
|