End of training
Browse files
eval_results.txt
ADDED
|
@@ -0,0 +1,10 @@
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| 1 |
+
eval_loss = 0.4027480185031891
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| 2 |
+
eval_precision = 0.9384057971014492
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| 3 |
+
eval_recall = 0.9055944055944056
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| 4 |
+
eval_f1 = 0.9217081850533808
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| 5 |
+
eval_accuracy = 0.9107505070993914
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| 6 |
+
eval_auc = 0.9577716969021316
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| 7 |
+
eval_runtime = 1.8908
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| 8 |
+
eval_samples_per_second = 260.739
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| 9 |
+
eval_steps_per_second = 16.395
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| 10 |
+
epoch = 6.0
|
predict_results/test_predictions.csv
ADDED
|
@@ -0,0 +1,494 @@
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|
| 1 |
+
,pmid,label,markerType,prediction,label_binary,proba
|
| 2 |
+
124,26549757.0,1,gene,1,1,0.99678373
|
| 3 |
+
77,11839404.0,0,chemical,0,0,0.0009486322
|
| 4 |
+
83,,0,snp,0,0,0.0009716418
|
| 5 |
+
252,,1,snp,1,1,0.98575354
|
| 6 |
+
356,15255457.0,1,gene,1,1,0.998116
|
| 7 |
+
50,,1,snp,1,1,0.9983633
|
| 8 |
+
54,,1,snp,1,1,0.9982697
|
| 9 |
+
334,9492179.0,0,gene,0,0,0.0011773536
|
| 10 |
+
298,25955575.0,1,gene,1,1,0.99654263
|
| 11 |
+
1567,505679.0,0,chemical,0,0,0.0069562816
|
| 12 |
+
84,,0,snp,0,0,0.0010119139
|
| 13 |
+
1179,26662448.0,1,gene,1,1,0.9980903
|
| 14 |
+
143,26549757.0,0,gene,0,0,0.01229192
|
| 15 |
+
95,,1,snp,1,1,0.9984964
|
| 16 |
+
238,1387863.0,1,gene,1,1,0.996837
|
| 17 |
+
91,,0,snp,0,0,0.001031882
|
| 18 |
+
281,9492179.0,0,gene,0,0,0.0011298981
|
| 19 |
+
257,,1,snp,1,1,0.99841475
|
| 20 |
+
969,18390427.0,0,chemical,0,0,0.00669539
|
| 21 |
+
1143,6282727.0,0,gene,0,0,0.021560915
|
| 22 |
+
1194,26662448.0,1,gene,1,1,0.9983596
|
| 23 |
+
926,10731506.0,1,chemical,1,1,0.9873147
|
| 24 |
+
288,22173610.0,1,gene,1,1,0.9981724
|
| 25 |
+
143,,0,snp,0,0,0.006273734
|
| 26 |
+
687,7327289.0,0,chemical,0,0,0.000773981
|
| 27 |
+
112,20332649.0,0,chemical,1,0,0.94282645
|
| 28 |
+
225,,1,snp,1,1,0.9983741
|
| 29 |
+
73,,1,snp,1,1,0.99674463
|
| 30 |
+
249,,1,snp,1,1,0.99859005
|
| 31 |
+
51,,1,snp,1,1,0.99706703
|
| 32 |
+
869,32963727.0,1,gene,1,1,0.9968124
|
| 33 |
+
207,,1,snp,0,1,0.0012376935
|
| 34 |
+
106,20332649.0,0,chemical,0,0,0.001069815
|
| 35 |
+
178,,1,snp,1,1,0.9977081
|
| 36 |
+
1583,2119041.0,0,chemical,0,0,0.002064074
|
| 37 |
+
142,,0,snp,0,0,0.005320617
|
| 38 |
+
328,12408500.0,1,gene,1,1,0.99765956
|
| 39 |
+
220,,1,snp,1,1,0.9976342
|
| 40 |
+
78,,1,snp,1,1,0.99733174
|
| 41 |
+
239,,1,snp,1,1,0.98719066
|
| 42 |
+
2,,1,snp,1,1,0.997355
|
| 43 |
+
607,11127335.0,0,chemical,0,0,0.061519418
|
| 44 |
+
1460,19284577.0,1,gene,0,1,0.02922975
|
| 45 |
+
127,,1,snp,1,1,0.9978416
|
| 46 |
+
118,,1,snp,1,1,0.99786913
|
| 47 |
+
6,,1,snp,1,1,0.99735487
|
| 48 |
+
217,1387863.0,0,gene,0,0,0.23090306
|
| 49 |
+
1159,19854709.0,0,gene,0,0,0.0009471555
|
| 50 |
+
213,,0,snp,0,0,0.010502462
|
| 51 |
+
309,21892537.0,1,gene,1,1,0.8517625
|
| 52 |
+
158,,1,snp,1,1,0.99030113
|
| 53 |
+
121,,1,snp,1,1,0.9976174
|
| 54 |
+
414,1568728.0,1,chemical,1,1,0.99547356
|
| 55 |
+
1216,19854709.0,0,gene,0,0,0.31458455
|
| 56 |
+
132,,1,snp,1,1,0.9980421
|
| 57 |
+
255,,1,snp,1,1,0.99837446
|
| 58 |
+
72,,1,snp,1,1,0.9964851
|
| 59 |
+
38,,1,snp,1,1,0.9979025
|
| 60 |
+
184,,1,snp,1,1,0.99834263
|
| 61 |
+
42,31531016.0,1,gene,1,1,0.9969574
|
| 62 |
+
327,2460156.0,0,gene,0,0,0.01142349
|
| 63 |
+
116,28921461.0,0,chemical,0,0,0.001057169
|
| 64 |
+
1626,505679.0,0,chemical,0,0,0.007450192
|
| 65 |
+
210,,1,snp,0,1,0.0014087544
|
| 66 |
+
1052,26662448.0,1,gene,1,1,0.99833655
|
| 67 |
+
264,1639952.0,0,gene,1,0,0.5136839
|
| 68 |
+
195,,1,snp,1,1,0.9984409
|
| 69 |
+
920,10940758.0,1,chemical,1,1,0.99768305
|
| 70 |
+
996,18390427.0,0,chemical,0,0,0.0011066836
|
| 71 |
+
65,,1,snp,1,1,0.99815804
|
| 72 |
+
109,19708783.0,0,chemical,0,0,0.0066866186
|
| 73 |
+
1288,10592468.0,1,gene,1,1,0.9946313
|
| 74 |
+
39,,1,snp,1,1,0.9984511
|
| 75 |
+
1038,12089604.0,0,chemical,0,0,0.023111194
|
| 76 |
+
173,,1,snp,1,1,0.99763536
|
| 77 |
+
365,9492179.0,0,gene,0,0,0.0035301214
|
| 78 |
+
100,,0,snp,0,0,0.0092039425
|
| 79 |
+
189,,1,snp,1,1,0.99828005
|
| 80 |
+
225,86201.0,1,gene,1,1,0.9084783
|
| 81 |
+
1627,2119041.0,1,chemical,1,1,0.9980451
|
| 82 |
+
124,,1,snp,1,1,0.99759704
|
| 83 |
+
140,,1,snp,1,1,0.99731725
|
| 84 |
+
228,,1,snp,1,1,0.99832064
|
| 85 |
+
613,7327289.0,0,chemical,0,0,0.0007666317
|
| 86 |
+
109,,1,snp,1,1,0.99782526
|
| 87 |
+
52,,1,snp,1,1,0.99370676
|
| 88 |
+
69,,1,snp,1,1,0.99775
|
| 89 |
+
53,,0,snp,0,0,0.01811918
|
| 90 |
+
877,32963727.0,1,gene,1,1,0.99794585
|
| 91 |
+
117,,1,snp,1,1,0.99760866
|
| 92 |
+
19,,1,snp,1,1,0.9983931
|
| 93 |
+
242,25955575.0,1,gene,1,1,0.9951416
|
| 94 |
+
110,,1,snp,1,1,0.9977543
|
| 95 |
+
875,32963727.0,1,gene,1,1,0.99652666
|
| 96 |
+
1167,19854709.0,1,gene,1,1,0.99760675
|
| 97 |
+
85,,0,snp,0,0,0.00097626523
|
| 98 |
+
589,11127335.0,0,chemical,0,0,0.07949259
|
| 99 |
+
1581,2119041.0,0,chemical,0,0,0.0026553466
|
| 100 |
+
13,,1,snp,1,1,0.99852544
|
| 101 |
+
49,,1,snp,1,1,0.9985152
|
| 102 |
+
17,,1,snp,1,1,0.99842274
|
| 103 |
+
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259,,1,snp,1,1,0.9983329
|
| 357 |
+
241,9492179.0,1,gene,1,1,0.96690416
|
| 358 |
+
70,,1,snp,1,1,0.99830496
|
| 359 |
+
350,8595516.0,1,gene,1,1,0.99647516
|
| 360 |
+
212,,0,snp,0,0,0.010952162
|
| 361 |
+
1614,505679.0,0,chemical,0,0,0.17437609
|
| 362 |
+
7,,1,snp,1,1,0.99795246
|
| 363 |
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1250,24354574.0,0,gene,0,0,0.0076042754
|
| 364 |
+
947,3944235.0,0,chemical,0,0,0.00073146855
|
| 365 |
+
29,,1,snp,1,1,0.99493474
|
| 366 |
+
206,,1,snp,0,1,0.0012709402
|
| 367 |
+
1236,1688495.0,0,gene,1,0,0.9570458
|
| 368 |
+
235,,1,snp,1,1,0.9981785
|
| 369 |
+
539,23137103.0,0,chemical,0,0,0.011219417
|
| 370 |
+
136,,0,snp,0,0,0.004053722
|
| 371 |
+
114,,1,snp,1,1,0.99770004
|
| 372 |
+
176,,1,snp,1,1,0.99827456
|
| 373 |
+
128,,0,snp,0,0,0.0010170519
|
| 374 |
+
147,,0,snp,0,0,0.015269759
|
| 375 |
+
1353,32765800.0,0,gene,0,0,0.009814553
|
| 376 |
+
126,,1,snp,1,1,0.99757105
|
| 377 |
+
64,,1,snp,1,1,0.99822813
|
| 378 |
+
223,,0,snp,1,0,0.9955647
|
| 379 |
+
47,,1,snp,1,1,0.99845564
|
| 380 |
+
175,,1,snp,1,1,0.99805605
|
| 381 |
+
154,,0,snp,0,0,0.0009248397
|
| 382 |
+
125,,1,snp,1,1,0.99758124
|
| 383 |
+
1377,23432377.0,0,gene,0,0,0.0066935485
|
| 384 |
+
37,,1,snp,1,1,0.9980648
|
| 385 |
+
148,,1,snp,1,1,0.9952369
|
| 386 |
+
111,,1,snp,1,1,0.9976732
|
| 387 |
+
203,,1,snp,0,1,0.001382557
|
| 388 |
+
92,,0,snp,0,0,0.0010325694
|
| 389 |
+
1,,1,snp,1,1,0.9981273
|
| 390 |
+
258,,1,snp,1,1,0.99832565
|
| 391 |
+
86,,0,snp,0,0,0.000968463
|
| 392 |
+
105,,1,snp,1,1,0.99770147
|
| 393 |
+
214,,0,snp,0,0,0.010535865
|
| 394 |
+
1092,26662448.0,1,gene,0,1,0.0024177316
|
| 395 |
+
352,25955575.0,0,gene,0,0,0.0028747767
|
| 396 |
+
169,,1,snp,1,1,0.99803156
|
| 397 |
+
243,,1,snp,1,1,0.9985684
|
| 398 |
+
107,,1,snp,1,1,0.9977527
|
| 399 |
+
21,,0,snp,0,0,0.0011189982
|
| 400 |
+
465,15070921.0,1,chemical,1,1,0.87360924
|
| 401 |
+
535,17640959.0,0,chemical,0,0,0.0038240042
|
| 402 |
+
33,,0,snp,0,0,0.0015749751
|
| 403 |
+
108,,1,snp,1,1,0.9977016
|
| 404 |
+
35,,1,snp,1,1,0.9985551
|
| 405 |
+
731,15070921.0,1,chemical,0,1,0.07648843
|
| 406 |
+
316,8595516.0,1,gene,1,1,0.99722266
|
| 407 |
+
209,,0,snp,0,0,0.0011487266
|
| 408 |
+
247,,1,snp,1,1,0.9983126
|
| 409 |
+
74,,1,snp,1,1,0.9980636
|
| 410 |
+
240,1387863.0,0,gene,0,0,0.11285984
|
| 411 |
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683,24047919.0,0,chemical,1,0,0.9953518
|
| 412 |
+
253,,1,snp,1,1,0.98553073
|
| 413 |
+
103,,1,snp,1,1,0.99859816
|
| 414 |
+
1127,25972622.0,0,gene,0,0,0.0010634485
|
| 415 |
+
312,12408500.0,1,gene,1,1,0.99828327
|
| 416 |
+
1221,23443801.0,0,gene,0,0,0.002070226
|
| 417 |
+
156,,1,snp,1,1,0.9938718
|
| 418 |
+
241,,0,snp,1,0,0.9855182
|
| 419 |
+
232,,1,snp,0,1,0.019162767
|
| 420 |
+
75,,1,snp,1,1,0.99728584
|
| 421 |
+
311,8595516.0,0,gene,0,0,0.002562329
|
| 422 |
+
1370,6781935.0,0,gene,0,0,0.048832625
|
| 423 |
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227,,1,snp,1,1,0.99839395
|
| 424 |
+
246,,0,snp,0,0,0.007487445
|
| 425 |
+
354,12408500.0,0,gene,0,0,0.009314935
|
| 426 |
+
932,16938113.0,0,chemical,0,0,0.008066432
|
| 427 |
+
48,,1,snp,1,1,0.9985152
|
| 428 |
+
1620,505679.0,1,chemical,1,1,0.69080824
|
| 429 |
+
1196,22719969.0,1,gene,1,1,0.98762274
|
| 430 |
+
197,,1,snp,1,1,0.9985259
|
| 431 |
+
1055,23443801.0,0,gene,0,0,0.0012827135
|
| 432 |
+
152,26549757.0,0,gene,0,0,0.0056222645
|
| 433 |
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144,26549757.0,0,gene,0,0,0.029583132
|
| 434 |
+
1296,2445464.0,0,gene,0,0,0.020274434
|
| 435 |
+
212,1387863.0,0,gene,0,0,0.013890155
|
| 436 |
+
642,10097296.0,0,chemical,0,0,0.00084846676
|
| 437 |
+
714,17388667.0,0,chemical,1,0,0.9967861
|
| 438 |
+
950,10940758.0,1,chemical,1,1,0.99833065
|
| 439 |
+
28,,1,snp,1,1,0.9980556
|
| 440 |
+
93,,1,snp,1,1,0.9983228
|
| 441 |
+
131,,0,snp,0,0,0.0009902361
|
| 442 |
+
1610,2119041.0,0,chemical,0,0,0.00088727503
|
| 443 |
+
205,,0,snp,0,0,0.0014070247
|
| 444 |
+
141,,0,snp,0,0,0.0061639627
|
| 445 |
+
185,,1,snp,1,1,0.9981274
|
| 446 |
+
215,1387863.0,0,gene,0,0,0.0008823091
|
| 447 |
+
1214,11305577.0,0,gene,0,0,0.003108125
|
| 448 |
+
245,,0,snp,0,0,0.007587611
|
| 449 |
+
231,,1,snp,1,1,0.9985336
|
| 450 |
+
272,21892537.0,0,gene,0,0,0.0025534688
|
| 451 |
+
133,,1,snp,1,1,0.99819833
|
| 452 |
+
130,,0,snp,0,0,0.0010278319
|
| 453 |
+
144,,1,snp,1,1,0.9980326
|
| 454 |
+
1327,9156046.0,0,gene,1,0,0.908495
|
| 455 |
+
167,,1,snp,1,1,0.9985241
|
| 456 |
+
626,29182708.0,0,chemical,0,0,0.0057991273
|
| 457 |
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1340,24461398.0,0,gene,0,0,0.00848538
|
| 458 |
+
25,31531016.0,1,gene,1,1,0.9513689
|
| 459 |
+
1625,2119041.0,0,chemical,0,0,0.0008764421
|
| 460 |
+
250,,1,snp,1,1,0.9981651
|
| 461 |
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1571,2119041.0,0,chemical,0,0,0.0034357945
|
| 462 |
+
262,25955575.0,1,gene,1,1,0.9958514
|
| 463 |
+
11,,0,snp,0,0,0.0011545292
|
| 464 |
+
30,,1,snp,1,1,0.99854374
|
| 465 |
+
119,,1,snp,1,1,0.997563
|
| 466 |
+
379,12408500.0,0,gene,0,0,0.008583972
|
| 467 |
+
55,,1,snp,1,1,0.9982382
|
| 468 |
+
112,,1,snp,1,1,0.99757105
|
| 469 |
+
63,,1,snp,1,1,0.99608576
|
| 470 |
+
177,,1,snp,1,1,0.9977342
|
| 471 |
+
159,,1,snp,1,1,0.99391913
|
| 472 |
+
152,,1,snp,1,1,0.9982242
|
| 473 |
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94,,0,snp,0,0,0.0057391943
|
| 474 |
+
27,,1,snp,1,1,0.99718446
|
| 475 |
+
42,,1,snp,1,1,0.9980471
|
| 476 |
+
1561,23634877.0,0,chemical,0,0,0.010058354
|
| 477 |
+
23,,0,snp,0,0,0.0011321948
|
| 478 |
+
232,1387863.0,0,gene,0,0,0.0008602344
|
| 479 |
+
57,,1,snp,1,1,0.9985801
|
| 480 |
+
103,19708783.0,1,chemical,1,1,0.99697137
|
| 481 |
+
287,1639952.0,0,gene,0,0,0.011831108
|
| 482 |
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1356,25494133.0,0,gene,0,0,0.008904009
|
| 483 |
+
302,25955575.0,1,gene,1,1,0.9886479
|
| 484 |
+
145,,0,snp,0,0,0.017959228
|
| 485 |
+
1203,19854709.0,1,gene,1,1,0.9947377
|
| 486 |
+
106,,1,snp,1,1,0.99775726
|
| 487 |
+
24,,0,snp,0,0,0.0010800286
|
| 488 |
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970,18390427.0,0,chemical,0,0,0.01282128
|
| 489 |
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1371,25494133.0,0,gene,0,0,0.008426122
|
| 490 |
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277,25955575.0,0,gene,1,0,0.9877243
|
| 491 |
+
157,,1,snp,1,1,0.99274445
|
| 492 |
+
60,,1,snp,1,1,0.9985929
|
| 493 |
+
190,,1,snp,1,1,0.99806374
|
| 494 |
+
238,,1,snp,1,1,0.9985618
|
predict_results/test_results.txt
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
test_loss = 0.4027480185031891
|
| 2 |
+
test_precision = 0.9384057971014492
|
| 3 |
+
test_recall = 0.9055944055944056
|
| 4 |
+
test_f1 = 0.9217081850533808
|
| 5 |
+
test_accuracy = 0.9107505070993914
|
| 6 |
+
test_auc = 0.9577716969021316
|
| 7 |
+
test_runtime = 1.8089
|
| 8 |
+
test_samples_per_second = 272.546
|
| 9 |
+
test_steps_per_second = 17.138
|
predict_results/test_results_chemical.txt
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
precision = 0.7692307692307693
|
| 2 |
+
recall = 0.8333333333333334
|
| 3 |
+
f1 = 0.8
|
| 4 |
+
accuracy = 0.8947368421052632
|
| 5 |
+
auc = 0.95481220657277
|
predict_results/test_results_gene.txt
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
precision = 0.9047619047619048
|
| 2 |
+
recall = 0.8507462686567164
|
| 3 |
+
f1 = 0.8769230769230769
|
| 4 |
+
accuracy = 0.8840579710144928
|
| 5 |
+
auc = 0.9409291570317427
|
predict_results/test_results_snp.txt
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
precision = 0.9732620320855615
|
| 2 |
+
recall = 0.9333333333333333
|
| 3 |
+
f1 = 0.9528795811518325
|
| 4 |
+
accuracy = 0.9307692307692308
|
| 5 |
+
auc = 0.9596055226824458
|
pytorch_model.bin
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 438019245
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:50108cce9b18c9cd960318839ac5118cd41f06091f8cfe8cab92f49fef57f8bb
|
| 3 |
size 438019245
|