{
  "window_size": 21,
  "stride": 5,
  "max_new_tokens": 64,
  "prompt_template": "Below is an instruction that describes a task. Write a response that appropriately completes the request.\n\n### Instruction:\n{instruction}\n{input}\n\n### Response:\n",
  "instructions": {
    "Methylation": "[Predict the methylation sites given the peptide sequence]",
    "Phosphorylation": "[Predict the phosphorylation sites given the peptide sequence]",
    "Ubiquitination": "[Predict the ubiquitination sites given the peptide sequence]"
  },
  "consensus_thresholds": {
    "Methylation": 0.3333333432674408,
    "Phosphorylation": 0.20000000298023224,
    "Ubiquitination": 0.20000000298023224
  },
  "output_format": "Sites=<X1,X2,...> where Xi is one-letter residue + 1-indexed position within the window"
}