Update README.md
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README.md
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@@ -66,7 +66,7 @@ optimizer = CodonOptimizer() #this loads the model & tokenizer using our built-i
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result = optimizer.optimize(
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protein_sequence="MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYK", #GFP
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species_token_type=
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deterministic=True #true by default
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)
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codon_optimized_sequence = result.sequence
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@@ -93,12 +93,12 @@ If you use this work, please cite:
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#### Model Organisms Species Token Type IDs
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| Organism | Token-Type ID |
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|-------------------------|----------------|
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| *E. coli* |
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| *S. cerevisiae* |
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| *C. elegans*|
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| *D. melanogaster*|
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| *D. rerio* |
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| *M. musculus* |
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| *A. thaliana* |
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| *H. sapiens* |
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| *C. griseus* |
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result = optimizer.optimize(
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protein_sequence="MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYK", #GFP
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species_token_type=30, #E. coli
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deterministic=True #true by default
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)
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codon_optimized_sequence = result.sequence
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#### Model Organisms Species Token Type IDs
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| Organism | Token-Type ID |
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|-------------------------|----------------|
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| *E. coli* | 30 |
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| *S. cerevisiae* | 118 |
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| *C. elegans*| 212 |
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| *D. melanogaster*| 190 |
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| *D. rerio* |428 |
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| *M. musculus* | 368 |
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| *A. thaliana* | 258 |
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| *H. sapiens* | 373 |
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| *C. griseus* | 345 |
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