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-[tool.poetry]
-name = "scprint"
-version = "0.1.0"
-license = "MIT"
-description = ""
-authors = ["jeremie kalfon"]
-readme = ["README.md", "LICENSE"]
-repository = "https://github.com/jkobject/scPrint"
-keywords = [
-  "scRNAseq",
-  "transformer",
-  "GRN",
-  "gene regulatory network",
-  "scPrint",
-]
-
-[tool.poetry.dependencies]
-lamindb = "*"
-python = "3.10"
-cellxgene-census = "*"
-torch = ">=2.0.0"
-anndata = "*"
-matplotlib = "*"
-seaborn = "*"
-gseapy = "*"
-ipykernel = "*"
-owlready2 = "*"
-torchdata = "*"
-biomart = "*"
-scib = "*"
-scikit-learn = "*"
-scipy = "*"
-pandas = ">=2.0.0"
-numpy = "*"
-leidenalg = "*"
-decoupler = "*"
-Bio = "*"
-attridict = "*"
-gget = "*"
-torchvision = "*"
-fair-esm = { git = "https://github.com/facebookresearch/esm.git", branch = "main" }
-hydra-core = "*"
-lightning = "*"
-#torchtext = "*"
-#transformers = "*"
-pynndescent = ">=0.5.11"
-scDataLoader = "*"
-einops = "*"
-rich = "*"
-typeshed-client = "*"
-tensorboardX = "*"
-jsonargparse = "*"
-docstring-parser = "*"
-lnschema-bionty = "*"
-bionty = "*"
-wandb = "*"
-wandb-core = "*"
-pykeops = "*"
-louvain = "*"
-hdbscan = "*"
-scib-metrics = "*"
-scikit-misc = "*"
-zarr = "*"
-galore-torch = { git = "https://github.com/jiaweizzhao/GaLore", branch = "master" }
-tensorly = "*3
-
-[tool.poetry.group.flashattention.dependencies]
-# C_INCLUDE_PATH=$CONDA_HOME/envs/scprint/include
-torchtext = "0.15.1"
-triton = "2.0.0.dev20221202" #no deps
-torch = "2.0.0"
-torchvision = "0.15.0"
-torchaudio = "2.0.0"
-pytorch-fast-transformers = "*"
-
-[tool.poetry.group.dev.dependencies]
-pytest = "^7.4.3"
-coverage = "^7.3.2"
-flake8 = "^6.1.0"
-black = "^23.10.1"
-isort = "^5.12.0"
-pytest-cov = "^4.1.0"
-mypy = "^1.6.1"
-gitchangelog = "^3.0.4"
-mkdocs = "^1.5.3"
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