| | """ |
| | Eigenvalue spectrum of graphs. |
| | """ |
| |
|
| | import networkx as nx |
| |
|
| | __all__ = [ |
| | "laplacian_spectrum", |
| | "adjacency_spectrum", |
| | "modularity_spectrum", |
| | "normalized_laplacian_spectrum", |
| | "bethe_hessian_spectrum", |
| | ] |
| |
|
| |
|
| | @nx._dispatchable(edge_attrs="weight") |
| | def laplacian_spectrum(G, weight="weight"): |
| | """Returns eigenvalues of the Laplacian of G |
| | |
| | Parameters |
| | ---------- |
| | G : graph |
| | A NetworkX graph |
| | |
| | weight : string or None, optional (default='weight') |
| | The edge data key used to compute each value in the matrix. |
| | If None, then each edge has weight 1. |
| | |
| | Returns |
| | ------- |
| | evals : NumPy array |
| | Eigenvalues |
| | |
| | Notes |
| | ----- |
| | For MultiGraph/MultiDiGraph, the edges weights are summed. |
| | See :func:`~networkx.convert_matrix.to_numpy_array` for other options. |
| | |
| | See Also |
| | -------- |
| | laplacian_matrix |
| | |
| | Examples |
| | -------- |
| | The multiplicity of 0 as an eigenvalue of the laplacian matrix is equal |
| | to the number of connected components of G. |
| | |
| | >>> G = nx.Graph() # Create a graph with 5 nodes and 3 connected components |
| | >>> G.add_nodes_from(range(5)) |
| | >>> G.add_edges_from([(0, 2), (3, 4)]) |
| | >>> nx.laplacian_spectrum(G) |
| | array([0., 0., 0., 2., 2.]) |
| | |
| | """ |
| | import scipy as sp |
| |
|
| | return sp.linalg.eigvalsh(nx.laplacian_matrix(G, weight=weight).todense()) |
| |
|
| |
|
| | @nx._dispatchable(edge_attrs="weight") |
| | def normalized_laplacian_spectrum(G, weight="weight"): |
| | """Return eigenvalues of the normalized Laplacian of G |
| | |
| | Parameters |
| | ---------- |
| | G : graph |
| | A NetworkX graph |
| | |
| | weight : string or None, optional (default='weight') |
| | The edge data key used to compute each value in the matrix. |
| | If None, then each edge has weight 1. |
| | |
| | Returns |
| | ------- |
| | evals : NumPy array |
| | Eigenvalues |
| | |
| | Notes |
| | ----- |
| | For MultiGraph/MultiDiGraph, the edges weights are summed. |
| | See to_numpy_array for other options. |
| | |
| | See Also |
| | -------- |
| | normalized_laplacian_matrix |
| | """ |
| | import scipy as sp |
| |
|
| | return sp.linalg.eigvalsh( |
| | nx.normalized_laplacian_matrix(G, weight=weight).todense() |
| | ) |
| |
|
| |
|
| | @nx._dispatchable(edge_attrs="weight") |
| | def adjacency_spectrum(G, weight="weight"): |
| | """Returns eigenvalues of the adjacency matrix of G. |
| | |
| | Parameters |
| | ---------- |
| | G : graph |
| | A NetworkX graph |
| | |
| | weight : string or None, optional (default='weight') |
| | The edge data key used to compute each value in the matrix. |
| | If None, then each edge has weight 1. |
| | |
| | Returns |
| | ------- |
| | evals : NumPy array |
| | Eigenvalues |
| | |
| | Notes |
| | ----- |
| | For MultiGraph/MultiDiGraph, the edges weights are summed. |
| | See to_numpy_array for other options. |
| | |
| | See Also |
| | -------- |
| | adjacency_matrix |
| | """ |
| | import scipy as sp |
| |
|
| | return sp.linalg.eigvals(nx.adjacency_matrix(G, weight=weight).todense()) |
| |
|
| |
|
| | @nx._dispatchable |
| | def modularity_spectrum(G): |
| | """Returns eigenvalues of the modularity matrix of G. |
| | |
| | Parameters |
| | ---------- |
| | G : Graph |
| | A NetworkX Graph or DiGraph |
| | |
| | Returns |
| | ------- |
| | evals : NumPy array |
| | Eigenvalues |
| | |
| | See Also |
| | -------- |
| | modularity_matrix |
| | |
| | References |
| | ---------- |
| | .. [1] M. E. J. Newman, "Modularity and community structure in networks", |
| | Proc. Natl. Acad. Sci. USA, vol. 103, pp. 8577-8582, 2006. |
| | """ |
| | import scipy as sp |
| |
|
| | if G.is_directed(): |
| | return sp.linalg.eigvals(nx.directed_modularity_matrix(G)) |
| | else: |
| | return sp.linalg.eigvals(nx.modularity_matrix(G)) |
| |
|
| |
|
| | @nx._dispatchable |
| | def bethe_hessian_spectrum(G, r=None): |
| | """Returns eigenvalues of the Bethe Hessian matrix of G. |
| | |
| | Parameters |
| | ---------- |
| | G : Graph |
| | A NetworkX Graph or DiGraph |
| | |
| | r : float |
| | Regularizer parameter |
| | |
| | Returns |
| | ------- |
| | evals : NumPy array |
| | Eigenvalues |
| | |
| | See Also |
| | -------- |
| | bethe_hessian_matrix |
| | |
| | References |
| | ---------- |
| | .. [1] A. Saade, F. Krzakala and L. Zdeborová |
| | "Spectral clustering of graphs with the bethe hessian", |
| | Advances in Neural Information Processing Systems. 2014. |
| | """ |
| | import scipy as sp |
| |
|
| | return sp.linalg.eigvalsh(nx.bethe_hessian_matrix(G, r).todense()) |
| |
|