Remove outdated environment configuration files and update README with detailed usage instructions for the Protein Location Predictor application. Add error handling for model loading in prediction utility, and include a sample protein sequence in FASTA format. Update the project structure and installation steps to reflect the latest changes.
ec4615b
| name: tesisEnv | |
| channels: | |
| - bioconda | |
| - anaconda | |
| - conda-forge | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1 | |
| - _openmp_mutex=5.1 | |
| - asttokens=3.0.0 | |
| - blas=1.0 | |
| - bottleneck=1.4.2 | |
| - brotli-python=1.0.9 | |
| - bzip2=1.0.8 | |
| - c-ares=1.19.1 | |
| - ca-certificates=2025.2.25 | |
| - certifi=2025.4.26 | |
| - comm=0.2.2 | |
| - contourpy=1.3.1 | |
| - cyrus-sasl=2.1.28 | |
| - debugpy=1.8.11 | |
| - decorator=5.2.1 | |
| - entrypoints=0.4 | |
| - exceptiongroup=1.2.2 | |
| - executing=2.2.0 | |
| - expat=2.7.1 | |
| - font-ttf-dejavu-sans-mono=2.37 | |
| - font-ttf-inconsolata=2.001 | |
| - font-ttf-source-code-pro=2.030 | |
| - font-ttf-ubuntu=0.83 | |
| - fontconfig=2.14.1 | |
| - fonts-anaconda=1 | |
| - freetype=2.13.3 | |
| - icu=73.1 | |
| - importlib-metadata=8.5.0 | |
| - intel-openmp=2023.1.0 | |
| - ipykernel=6.29.5 | |
| - ipython=8.33.0 | |
| - ipywidgets=8.1.5 | |
| - jedi=0.19.2 | |
| - jpeg=9e | |
| - jsonschema=4.23.0 | |
| - jsonschema-specifications=2023.7.1 | |
| - jupyter_client=7.3.4 | |
| - jupyter_core=5.7.2 | |
| - jupyterlab_widgets=3.0.13 | |
| - kaleido-core=0.2.1 | |
| - kiwisolver=1.4.8 | |
| - krb5=1.20.1 | |
| - lcms2=2.16 | |
| - ld_impl_linux-64=2.40 | |
| - lerc=4.0.0 | |
| - libabseil=20250127.0 | |
| - libcups=2.4.2 | |
| - libcurl=8.12.1 | |
| - libdeflate=1.22 | |
| - libedit=3.1.20230828 | |
| - libev=4.33 | |
| - libffi=3.4.4 | |
| - libgcc-ng=11.2.0 | |
| - libglib=2.78.4 | |
| - libgomp=11.2.0 | |
| - libiconv=1.16 | |
| - libnghttp2=1.57.0 | |
| - libpng=1.6.39 | |
| - libpq=17.4 | |
| - libprotobuf=5.29.3 | |
| - libsodium=1.0.18 | |
| - libssh2=1.11.1 | |
| - libstdcxx-ng=11.2.0 | |
| - libtiff=4.7.0 | |
| - libuuid=1.41.5 | |
| - libwebp-base=1.3.2 | |
| - libxcb=1.15 | |
| - libxkbcommon=1.0.1 | |
| - libxml2=2.13.7 | |
| - llvmlite=0.44.0 | |
| - lz4-c=1.9.4 | |
| - mathjax=2.7.5 | |
| - matplotlib-base=3.10.0 | |
| - matplotlib-inline=0.1.7 | |
| - mkl=2023.1.0 | |
| - mkl-service=2.4.0 | |
| - mkl_fft=1.3.11 | |
| - mkl_random=1.2.8 | |
| - mysql=8.4.0 | |
| - narwhals=1.31.0 | |
| - nbformat=5.10.4 | |
| - ncurses=6.4 | |
| - nest-asyncio=1.6.0 | |
| - nspr=4.35 | |
| - nss=3.89.1 | |
| - numba=0.61.0 | |
| - numexpr=2.10.1 | |
| - numpy=1.26.4 | |
| - numpy-base=1.26.4 | |
| - openjpeg=2.5.2 | |
| - openldap=2.6.4 | |
| - openssl=3.0.16 | |
| - packaging=24.2 | |
| - pandas=2.2.3 | |
| - parso=0.8.4 | |
| - pcre2=10.42 | |
| - pexpect=4.9.0 | |
| - pickleshare=0.7.5 | |
| - pillow=11.1.0 | |
| - pip=25.0 | |
| - platformdirs=4.3.6 | |
| - plotly=6.0.1 | |
| - prompt-toolkit=3.0.50 | |
| - psutil=5.9.1 | |
| - ptyprocess=0.7.0 | |
| - pure_eval=0.2.3 | |
| - pyfaidx=0.8.1.3 | |
| - pygments=2.19.1 | |
| - pynndescent=0.5.10 | |
| - pyqt=6.7.1 | |
| - pyqt6-sip=13.9.1 | |
| - python=3.10.16 | |
| - python-dateutil=2.9.0.post0 | |
| - python-fastjsonschema=2.20.0 | |
| - python-kaleido=0.2.1 | |
| - python-tzdata=2025.2 | |
| - python_abi=3.10 | |
| - pyvcf3=1.0.3 | |
| - pyzmq=26.2.0 | |
| - qtbase=6.7.3 | |
| - qtdeclarative=6.7.3 | |
| - qtsvg=6.7.3 | |
| - qttools=6.7.3 | |
| - qtwebchannel=6.7.3 | |
| - qtwebsockets=6.7.3 | |
| - readline=8.2 | |
| - referencing=0.30.2 | |
| - rpds-py=0.22.3 | |
| - seaborn=0.13.2 | |
| - setuptools=75.8.0 | |
| - sip=6.10.0 | |
| - six=1.17.0 | |
| - sqlite=3.45.3 | |
| - stack_data=0.6.3 | |
| - tbb=2021.8.0 | |
| - tk=8.6.14 | |
| - tomli=2.0.1 | |
| - tornado=6.1 | |
| - traitlets=5.14.3 | |
| - typing_extensions=4.12.2 | |
| - umap-learn=0.5.7 | |
| - unicodedata2=15.1.0 | |
| - wcwidth=0.2.13 | |
| - wheel=0.45.1 | |
| - widgetsnbextension=4.0.13 | |
| - xcb-util-cursor=0.1.4 | |
| - xz=5.6.4 | |
| - zeromq=4.3.5 | |
| - zipp=3.21.0 | |
| - zlib=1.2.13 | |
| - pip: | |
| - attrs==25.1.0 | |
| - biopython==1.85 | |
| - biotite==0.41.2 | |
| - brotli==1.1.0 | |
| - charset-normalizer==3.4.1 | |
| - cloudpathlib==0.20.0 | |
| - cycler==0.12.1 | |
| - dna-features-viewer==3.1.4 | |
| - einops==0.8.1 | |
| - esm==3.1.4 | |
| - filelock==3.17.0 | |
| - fonttools==4.56.0 | |
| - fsspec==2025.2.0 | |
| - graphql-core==3.2.6 | |
| - graphviz==0.20.3 | |
| - huggingface-hub==0.29.1 | |
| - idna==3.10 | |
| - jinja2==3.1.5 | |
| - joblib==1.4.2 | |
| - markupsafe==3.0.2 | |
| - matplotlib==3.10.1 | |
| - mpmath==1.3.0 | |
| - msgpack==1.1.0 | |
| - msgpack-numpy==0.4.8 | |
| - networkx==3.4.2 | |
| - nvidia-cublas-cu12==12.4.5.8 | |
| - nvidia-cuda-cupti-cu12==12.4.127 | |
| - nvidia-cuda-nvrtc-cu12==12.4.127 | |
| - nvidia-cuda-runtime-cu12==12.4.127 | |
| - nvidia-cudnn-cu12==9.1.0.70 | |
| - nvidia-cufft-cu12==11.2.1.3 | |
| - nvidia-curand-cu12==10.3.5.147 | |
| - nvidia-cusolver-cu12==11.6.1.9 | |
| - nvidia-cusparse-cu12==12.3.1.170 | |
| - nvidia-cusparselt-cu12==0.6.2 | |
| - nvidia-nccl-cu12==2.21.5 | |
| - nvidia-nvjitlink-cu12==12.4.127 | |
| - nvidia-nvtx-cu12==12.4.127 | |
| - protobuf==6.31.0 | |
| - py3dmol==2.4.2 | |
| - pyparsing==3.2.1 | |
| - pytz==2025.1 | |
| - pyyaml==6.0.2 | |
| - rcsb-api==1.1.3 | |
| - regex==2024.11.6 | |
| - requests==2.32.3 | |
| - rustworkx==0.16.0 | |
| - safetensors==0.5.3 | |
| - scikit-learn==1.6.1 | |
| - scipy==1.15.2 | |
| - sentencepiece==0.2.0 | |
| - sympy==1.13.1 | |
| - tenacity==9.0.0 | |
| - threadpoolctl==3.5.0 | |
| - tokenizers==0.20.3 | |
| - torch==2.6.0 | |
| - torchtext==0.18.0 | |
| - torchvision==0.21.0 | |
| - tqdm==4.67.1 | |
| - transformers==4.46.3 | |
| - triton==3.2.0 | |
| - tzdata==2025.1 | |
| - uniprot-id-mapper==1.1.4 | |
| - urllib3==2.3.0 | |
| - zstd==1.5.6.5 | |