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ProteinLocationPredictor

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jpuglia commited on
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5b2ffea
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1 Parent(s): 07c222a

Remove unused plot images and clean up whitespace in my_utils.py

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Files changed (18) hide show
  1. Plots/ConfusionMatrix/CM_ESM600m.png +0 -0
  2. Plots/ConfusionMatrix/CM_RF_ESM300m.png +0 -0
  3. Plots/ConfusionMatrix/CM_RF_ProstT5.png +0 -0
  4. Plots/ConfusionMatrix/CM_SVM_ESM300m.png +0 -0
  5. Plots/ConfusionMatrix/CM_SVM_ESM600m.png +0 -0
  6. Plots/ConfusionMatrix/CM_SVM_ProstT5.png +0 -0
  7. Plots/Embeddings/PCA_ESM300m.png +0 -3
  8. Plots/Embeddings/PCA_ESM600m.png +0 -3
  9. Plots/Embeddings/PCA_ProstT5.png +0 -3
  10. Plots/Embeddings/UMAP_ESM300m.png +0 -3
  11. Plots/Embeddings/UMAP_ESM600m.png +0 -3
  12. Plots/Embeddings/UMAP_ProstT5.png +0 -3
  13. Plots/Embeddings/t-SNE_ESM300m.png +0 -3
  14. Plots/Embeddings/t-SNE_ESM600m.png +0 -3
  15. Plots/Embeddings/t-SNE_ProstT5.png +0 -3
  16. Plots/ModelEvaluations/RFevaluacion.png +0 -0
  17. Plots/ModelEvaluations/SVMevaluacion.png +0 -0
  18. src/my_utils.py +1 -1
Plots/ConfusionMatrix/CM_ESM600m.png DELETED
Binary file (52.5 kB)
 
Plots/ConfusionMatrix/CM_RF_ESM300m.png DELETED
Binary file (53.8 kB)
 
Plots/ConfusionMatrix/CM_RF_ProstT5.png DELETED
Binary file (54.6 kB)
 
Plots/ConfusionMatrix/CM_SVM_ESM300m.png DELETED
Binary file (52.6 kB)
 
Plots/ConfusionMatrix/CM_SVM_ESM600m.png DELETED
Binary file (51.8 kB)
 
Plots/ConfusionMatrix/CM_SVM_ProstT5.png DELETED
Binary file (51 kB)
 
Plots/Embeddings/PCA_ESM300m.png DELETED

Git LFS Details

  • SHA256: 5829c7fa9d5c4dbf5f9d063b2d6f2eda461515fe058333a9993425ee14c8ddc7
  • Pointer size: 131 Bytes
  • Size of remote file: 353 kB
Plots/Embeddings/PCA_ESM600m.png DELETED

Git LFS Details

  • SHA256: dfc444490d5dcd0ce78cbf0adaf36704b7627f34f11ace6875b1d611df019b1f
  • Pointer size: 131 Bytes
  • Size of remote file: 304 kB
Plots/Embeddings/PCA_ProstT5.png DELETED

Git LFS Details

  • SHA256: 9007656731995d9ddc15aa041fa3240c556a012e72bfec26407ef010705d34a4
  • Pointer size: 131 Bytes
  • Size of remote file: 333 kB
Plots/Embeddings/UMAP_ESM300m.png DELETED

Git LFS Details

  • SHA256: 1ac5eb50417887ffcab711918d9f28d29c7a0a009fbc9f7aab99061c9e01dbb7
  • Pointer size: 131 Bytes
  • Size of remote file: 128 kB
Plots/Embeddings/UMAP_ESM600m.png DELETED

Git LFS Details

  • SHA256: 65ed1e0ce20d144390261ec444dafde2dacb939f70b1d28e3bb1d9f49722bc13
  • Pointer size: 131 Bytes
  • Size of remote file: 133 kB
Plots/Embeddings/UMAP_ProstT5.png DELETED

Git LFS Details

  • SHA256: b687037c86a9c65d54ef03b674b3812996dfb97d723e55177b3a4864be2947e2
  • Pointer size: 131 Bytes
  • Size of remote file: 113 kB
Plots/Embeddings/t-SNE_ESM300m.png DELETED

Git LFS Details

  • SHA256: f0dd6ce7c94934160b871fe80740dd8809110789ae2b979df84b1a6245464a5f
  • Pointer size: 131 Bytes
  • Size of remote file: 284 kB
Plots/Embeddings/t-SNE_ESM600m.png DELETED

Git LFS Details

  • SHA256: d4b40e9f023cec35097d7190ce319252eb508aa9fd4828669b9e498a758039a7
  • Pointer size: 131 Bytes
  • Size of remote file: 283 kB
Plots/Embeddings/t-SNE_ProstT5.png DELETED

Git LFS Details

  • SHA256: 26c4f88d0cdba816ae3f09aaab1e886d50dc10339d9052b155a9d3cbfdd97c7a
  • Pointer size: 131 Bytes
  • Size of remote file: 217 kB
Plots/ModelEvaluations/RFevaluacion.png DELETED
Binary file (33.5 kB)
 
Plots/ModelEvaluations/SVMevaluacion.png DELETED
Binary file (35.2 kB)
 
src/my_utils.py CHANGED
@@ -626,7 +626,7 @@ def fetch_sequences_for_dataframe(df: pd.DataFrame) -> pd.DataFrame:
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  return result_df
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-
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  def esm_embed(model: ESMC,
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  seq : str,
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  acc : str,
 
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  return result_df
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+
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  def esm_embed(model: ESMC,
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  seq : str,
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  acc : str,