Commit History

Refactor code structure for improved readability and maintainability
fe2d945

jpuglia commited on

Update model evaluation metrics and classification reports for improved accuracy
572d8c1

jpuglia commited on

Refactor code structure for improved readability and maintainability
b816ad0

jpuglia commited on

Remove hardcoded NCBI credentials in fetch_refseq_sequence function
a76085f

jpuglia commited on

Update GUI title and button text for clarity in Protein Location Predictor
2491d7e

jpuglia commited on

Remove unused plot images and clean up whitespace in my_utils.py
5b2ffea

jpuglia commited on

Update dependencies in my_utils.py and clean up imports
5f9e451

jpuglia commited on

Refactor fetch_refseq_sequence to improve error handling and input validation
f944901

jpuglia commited on

Update README.md: Clarify application description and improve example input/output formatting
458f017

jpuglia commited on

Remove outdated environment configuration files and update README with detailed usage instructions for the Protein Location Predictor application. Add error handling for model loading in prediction utility, and include a sample protein sequence in FASTA format. Update the project structure and installation steps to reflect the latest changes.
ec4615b

jpuglia commited on

Update model loading and prediction methods to use SVM; enhance label encoding and improve variable naming for clarity
96b4d50

jpuglia commited on

Streamline training of rf and svm models, renameing notebooks, minor changes to my_utils.py and creation of evaluation.csv
4df44a7

jpuglia commited on

Refactor my_utils.py: Simplify type hints, enhance evaluate and training functions, and improve error handling in sequence fetching
923a7e5

jpuglia commited on

Refactor and optimize notebook utilities and model training functions
816b1ef

jpuglia commited on

Update project structure and remove unused notebooks
e10ca7d

jpuglia commited on

Add Tkinter-based GUI for Protein Location Prediction
3be0ce1

jpuglia commited on

Fix formatting in prediction output: Remove space before commas in saved predictions
54135dd

jpuglia commited on

Enhance file handling: Update .gitignore and improve prediction output saving with user-defined filenames in my_utils.py
f29fbd1

jpuglia commited on

Enhance prediction functionality: Add ESM model support and progress feedback in the CLI
b73ccc2

jpuglia commited on

Enhance CLI functionality: Implement file loading and prediction features with user feedback in Tkinter GUI
4b71c5b

jpuglia commited on

Refactor GUI: Reintroduce Tkinter menu for Protein Tools application with updated button functionality
fbdd746

jpuglia commited on

Created CLI prototype, rearregement of files
2941a1c

jpuglia commited on