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README.md

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+---
+tags:
+- transcriptomics
+- dimensionality-reduction
+- tabpfn
+- TRACERx
+license: mit
+---
+
+# TABPFN Model - transcriptome mode - 16D
+
+Pre-trained tabpfn model for transcriptomic data compression.
+
+## Details
+- **Mode**: transcriptome-centric compression
+- **Dimensions**: 16
+- **Training data**: TRACERx lung cancer transcriptomics
+- **Created**: 2026-01-09T21:06:32.838883
+
+## Usage
+
+```python
+import joblib
+from huggingface_hub import snapshot_download
+
+# Download model
+local_dir = snapshot_download("jruffle/tabpfn_transcriptome_16d")
+model = joblib.load(f"{local_dir}/model.joblib")
+
+# For classical models (PCA/UMAP):
+# model contains: 'pca', 'umap', 'robust_scaler', 'gene_order'
+
+# For TabPFN models:
+# model contains: 'tabpfn_embedding', 'pca_final', 'input_scaler', etc.
+```

metadata.json

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+{
+  "model_type": "tabpfn",
+  "mode": "transcriptome",
+  "dimensions": 16,
+  "created": "2026-01-09T21:06:32.839139",
+  "keys": [
+    "tabpfn_embedding",
+    "input_scaler",
+    "pca_reduce",
+    "pca_final",
+    "kmeans",
+    "pseudo_labels",
+    "train_indices",
+    "X_train",
+    "y_train",
+    "n_components",
+    "max_features",
+    "data_reduced_shape",
+    "mode",
+    "row_ids",
+    "feature_ids",
+    "robust_scaler",
+    "reference_embeddings"
+  ]
+}

model.joblib

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+version https://git-lfs.github.com/spec/v1
+oid sha256:226af2a886806ce093840d2698c27a0e18ae3f4dc01cb3e9600605405b3a2adf
+size 47408226