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1 Parent(s): 73ae5fb

adding new GB1 data and APEXGo checkpoints

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Files changed (26) hide show
  1. APEXGo/saved_models/CreiLOV/exalted-pine-5_model_state_epoch_241-train-zs.csv +3 -0
  2. APEXGo/saved_models/CreiLOV/exalted-pine-5_model_state_epoch_241.pkl +3 -0
  3. APEXGo/saved_models/GB1/absurd-cosmos-6_model_state_epoch_391-train-zs.csv +3 -0
  4. APEXGo/saved_models/GB1/absurd-cosmos-6_model_state_epoch_391.pkl +3 -0
  5. APEXGo/saved_models/TrpB/dainty-dream-9_model_state_epoch_421-train-zs.csv +3 -0
  6. APEXGo/saved_models/TrpB/dainty-dream-9_model_state_epoch_421.pkl +3 -0
  7. checkpoints/causalLM_finetune/CreiLOV/best/config.json +1 -1
  8. checkpoints/causalLM_finetune/CreiLOV/best/generation_config.json +1 -1
  9. checkpoints/causalLM_finetune/CreiLOV/best/model.safetensors +1 -1
  10. checkpoints/causalLM_finetune/GB1/best/config.json +41 -0
  11. checkpoints/causalLM_finetune/GB1/best/generation_config.json +6 -0
  12. checkpoints/causalLM_finetune/GB1/best/model.safetensors +3 -0
  13. checkpoints/causalLM_finetune/TrpB/best/config.json +1 -1
  14. checkpoints/causalLM_finetune/TrpB/best/generation_config.json +1 -1
  15. checkpoints/causalLM_finetune/TrpB/best/model.safetensors +1 -1
  16. checkpoints/continuous/GB1/best_model.ckpt +3 -0
  17. checkpoints/d3pm_finetune/GB1/best_model.ckpt +3 -0
  18. checkpoints/mdlm/GB1/best_model.ckpt +3 -0
  19. data/hmmer/jackhmmer/GB1.domtbl +3 -0
  20. data/hmmer/jackhmmer/GB1_alignment.a2m +3 -0
  21. data/hmmer/jackhmmer/GB1_alignment.fasta +3 -0
  22. data/hmmer/jackhmmer/GB1_alignment.sto +3 -0
  23. data/hmmer/jackhmmer/GB1_seqs.fasta +3 -0
  24. data/raw_data/GB1_fitness/1-s2.0-S0960982214012688-mmc2.xlsx +3 -0
  25. data/raw_data/GB1_fitness/doubles.csv +3 -0
  26. data/raw_data/GB1_fitness/singles.csv +3 -0
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