vcf='/absolute_path_to_your_file/example.vcf' samples='/absolute_path_to_your_files/hapmap-ceu-all.lift.vcf' conform='/absolute_your_path/conform-gt.24May16.cee.jar' beagle='/absolute_your_path/beagle.22Jul22.46e.jar' ref='/absolute_your_path/reference' maps='/absolute_your_path/maps' gb=20