andyjzhao commited on
Commit
0ba4b40
·
verified ·
1 Parent(s): 1f449ad

Upload folder using huggingface_hub

Browse files
checkpoint-20/optimizer.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:925e7c3900591222762661453ccd0b69bba92ee0317e75507f9a70ee3f70724c
3
+ size 558664971
checkpoint-20/pytorch_model.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a6415cb16517110e0c48fc221ff175d37dfac542b01c1183d83871327aa7a6f3
3
+ size 279336283
checkpoint-20/rng_state.pth ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1fe2e5ab8d63d8f587ff484b7963ef92eb54d0ea1bb3d32fbe6cf85156273de3
3
+ size 15407
checkpoint-20/scheduler.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ecaab21e04d2e794589a8c8e44154e4dc12f44ad7086b42f92fd52062990394c
3
+ size 1529
checkpoint-20/trainer_state.json ADDED
@@ -0,0 +1,150 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "best_global_step": 20,
3
+ "best_metric": 83052.92336765953,
4
+ "best_model_checkpoint": "/network/scratch/j/jianan.zhao/DNAFM/output/gencode_human_12.8k_12800/CKPT_DEBUG/checkpoint-20",
5
+ "epoch": 0.0007091444172605751,
6
+ "eval_steps": 10,
7
+ "global_step": 20,
8
+ "is_hyper_param_search": false,
9
+ "is_local_process_zero": true,
10
+ "is_world_process_zero": true,
11
+ "log_history": [
12
+ {
13
+ "comp/rl_weight": 0.03,
14
+ "comp/strictness": 0.0,
15
+ "epoch": 0.00035457220863028757,
16
+ "grad_norm": 1119.484619140625,
17
+ "loss": 146.4954,
18
+ "loss_ce": 55.18280029296875,
19
+ "loss_region": 0.10638566315174103,
20
+ "loss_total": 55.2891845703125,
21
+ "lr": 2.20454076850486e-05,
22
+ "router/selected_tokens_s0": 22.90625,
23
+ "router/selected_tokens_s1": 1.0,
24
+ "step": 10,
25
+ "tokens_trained": 0.00409568
26
+ },
27
+ {
28
+ "epoch": 0.00035457220863028757,
29
+ "eval_ppl": 1.089793926702946e+18,
30
+ "eval_runtime": 7.4688,
31
+ "step": 10,
32
+ "tokens_trained": 0.00409568
33
+ },
34
+ {
35
+ "epoch": 0.00035457220863028757,
36
+ "eval_F": 7.813110399249941e-05,
37
+ "eval_F_cds": 4.744345662481978e-05,
38
+ "eval_F_dig": 7.813110399249941e-05,
39
+ "eval_F_exon": 6.977782739756614e-05,
40
+ "eval_F_intron": 8.580132276805985e-05,
41
+ "eval_F_nig": 8.365496566708533e-05,
42
+ "eval_F_promoter": 4.770454407466195e-05,
43
+ "eval_F_utr": 7.9026626119178e-05,
44
+ "eval_G": 0.00018098983848678323,
45
+ "eval_G_cds": 0.00017869544990893493,
46
+ "eval_G_dig": 0.00016462976436961221,
47
+ "eval_G_exon": 0.0001940150685218265,
48
+ "eval_G_intron": 0.00017927827939164204,
49
+ "eval_G_nig": 0.0001736500060544804,
50
+ "eval_G_promoter": 0.00019476532074800724,
51
+ "eval_G_utr": 0.00020035056174760066,
52
+ "eval_avg_bp_per_token": 12799.0,
53
+ "eval_bp_per_token/cds": 21077.722222222223,
54
+ "eval_bp_per_token/dig": 12799.0,
55
+ "eval_bp_per_token/exon": 14331.2,
56
+ "eval_bp_per_token/intron": 11654.831973898858,
57
+ "eval_bp_per_token/nig": 11953.86301369863,
58
+ "eval_bp_per_token/promoter": 20962.363636363636,
59
+ "eval_bp_per_token/utr": 12653.962962962964,
60
+ "eval_ppl_cds": 3.6165174451293454e+20,
61
+ "eval_ppl_dig": 1.0595141039292915e+17,
62
+ "eval_ppl_exon": 3.0494664121994173e+18,
63
+ "eval_ppl_intron": 4.124064470122155e+17,
64
+ "eval_ppl_nig": 1.7108246674137136e+17,
65
+ "eval_ppl_promoter": 2.3044177457874593e+20,
66
+ "eval_ppl_utr": 6.966228632508205e+17,
67
+ "step": 10,
68
+ "tokens_trained": 0.00409568
69
+ },
70
+ {
71
+ "comp/rl_weight": 0.03,
72
+ "comp/strictness": 0.0,
73
+ "epoch": 0.0007091444172605751,
74
+ "grad_norm": 296.3909606933594,
75
+ "loss": 26.0585,
76
+ "loss_ce": 12.013338088989258,
77
+ "loss_region": 0.09937021881341934,
78
+ "loss_total": 12.11270809173584,
79
+ "lr": 4.654030511288038e-05,
80
+ "router/selected_tokens_s0": 1.0,
81
+ "router/selected_tokens_s1": 1.0,
82
+ "step": 20,
83
+ "tokens_trained": 0.00819136
84
+ },
85
+ {
86
+ "epoch": 0.0007091444172605751,
87
+ "eval_ppl": 83052.92336765953,
88
+ "eval_runtime": 6.5101,
89
+ "step": 20,
90
+ "tokens_trained": 0.00819136
91
+ },
92
+ {
93
+ "epoch": 0.0007091444172605751,
94
+ "eval_F": 7.813110399249941e-05,
95
+ "eval_F_cds": 4.744345662481978e-05,
96
+ "eval_F_dig": 7.813110399249941e-05,
97
+ "eval_F_exon": 6.977782739756614e-05,
98
+ "eval_F_intron": 8.580132276805985e-05,
99
+ "eval_F_nig": 8.365496566708533e-05,
100
+ "eval_F_promoter": 4.770454407466195e-05,
101
+ "eval_F_utr": 7.9026626119178e-05,
102
+ "eval_G": 7.813110399249941e-05,
103
+ "eval_G_cds": 4.744345662481978e-05,
104
+ "eval_G_dig": 7.813110399249941e-05,
105
+ "eval_G_exon": 6.977782739756614e-05,
106
+ "eval_G_intron": 8.580132276805985e-05,
107
+ "eval_G_nig": 8.365496566708533e-05,
108
+ "eval_G_promoter": 4.770454407466195e-05,
109
+ "eval_G_utr": 7.9026626119178e-05,
110
+ "eval_avg_bp_per_token": 12799.0,
111
+ "eval_bp_per_token/cds": 21077.722222222223,
112
+ "eval_bp_per_token/dig": 12799.0,
113
+ "eval_bp_per_token/exon": 14331.2,
114
+ "eval_bp_per_token/intron": 11654.831973898858,
115
+ "eval_bp_per_token/nig": 11953.86301369863,
116
+ "eval_bp_per_token/promoter": 20962.363636363636,
117
+ "eval_bp_per_token/utr": 12653.962962962964,
118
+ "eval_ppl_cds": 190899.46793400217,
119
+ "eval_ppl_dig": 22914.483406702355,
120
+ "eval_ppl_exon": 75671.08690466816,
121
+ "eval_ppl_intron": 69044.63564426819,
122
+ "eval_ppl_nig": 65731.35949006735,
123
+ "eval_ppl_promoter": 211928.04291369749,
124
+ "eval_ppl_utr": 113084.05555305106,
125
+ "step": 20,
126
+ "tokens_trained": 0.00819136
127
+ }
128
+ ],
129
+ "logging_steps": 10,
130
+ "max_steps": 20,
131
+ "num_input_tokens_seen": 0,
132
+ "num_train_epochs": 1,
133
+ "save_steps": 10,
134
+ "stateful_callbacks": {
135
+ "TrainerControl": {
136
+ "args": {
137
+ "should_epoch_stop": false,
138
+ "should_evaluate": false,
139
+ "should_log": false,
140
+ "should_save": true,
141
+ "should_training_stop": true
142
+ },
143
+ "attributes": {}
144
+ }
145
+ },
146
+ "total_flos": 0.0,
147
+ "train_batch_size": 32,
148
+ "trial_name": null,
149
+ "trial_params": null
150
+ }
checkpoint-20/training_args.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:598e63fc194a844bc1f682ff5be48e182568d89fdb52af1791c3d1ed5721322a
3
+ size 5969