""" Ensemble evaluation for RockGlacierNet — averages N SwinUNet checkpoints. Each model runs 8-way TTA (4 rotations x 2 flips); the per-pixel sigmoid probabilities are averaged across ALL models AND all TTA transforms, then scored exactly like evaluate.py (valid-region only, threshold sweep, per-image). Usage (set the checkpoints, then run): CKPT_PATHS="dir1/best.h5,dir2/best.h5,dir3/best.h5" \ DATA_DIR=dataset/patches_v2 \ BAND_LIST="band_25,band_18,..." \ OUT_DIR=bandselection/ensemble_test \ python3 evaluate_ensemble.py """ import os import glob import json import numpy as np np.Inf = np.inf import pandas as pd import tensorflow as tf from sklearn.metrics import confusion_matrix from data_generator import GLOBAL_MEAN, GLOBAL_STD from models.swin_unet import build_model # ───────────────────────────────────────────────────────────────────────────── # Config # ───────────────────────────────────────────────────────────────────────────── DATA_DIR = os.environ.get("DATA_DIR", "dataset/patches_v2") TEST_FEAT = os.environ.get("TEST_FEAT", f"{DATA_DIR}/test/features") TEST_MASK = os.environ.get("TEST_MASK", f"{DATA_DIR}/test/masks") OUT_DIR = os.environ.get("OUT_DIR", "bandselection/ensemble_test") # Comma-separated list of best_model.weights.h5 paths (one per ensemble member) CKPT_PATHS = [p.strip() for p in os.environ["CKPT_PATHS"].split(",") if p.strip()] # Bands MUST match training (all members share the same band set here). _band_names = json.load(open(f"{DATA_DIR}/metadata/norm_stats.json"))["band_names"] if os.environ.get("BAND_LIST"): _bands = [b.strip() for b in os.environ["BAND_LIST"].split(",") if b.strip()] BAND_INDICES = [_band_names.index(b) for b in _bands] else: BAND_INDICES = None _ph, _pw = np.load(sorted(glob.glob(f"{TEST_FEAT}/*.npy"))[0]).shape[:2] N_BANDS = len(BAND_INDICES) if BAND_INDICES else len(_band_names) INPUT_SHAPE = (_ph, _pw, N_BANDS) BATCH_SIZE = 8 THRESHOLDS = [0.30, 0.35, 0.40, 0.45, 0.50, 0.55, 0.60, 0.65, 0.70] os.makedirs(OUT_DIR, exist_ok=True) print(f"[ensemble] {len(CKPT_PATHS)} models | bands={N_BANDS} | patch={_ph}x{_pw}") for p in CKPT_PATHS: print(f" {p}") # ───────────────────────────────────────────────────────────────────────────── # Normalization — use the first checkpoint's saved stats (all identical here) # ───────────────────────────────────────────────────────────────────────────── def _load_norm(ckpt_path): cand = os.path.join(os.path.dirname(ckpt_path), "norm_stats.json") if os.path.exists(cand): st = json.load(open(cand)) m = np.array(st["mean"], np.float32).reshape(1, 1, -1) s = np.array(st["std"], np.float32).reshape(1, 1, -1) print(f"[ensemble] norm stats: {cand}") return m, s print("[ensemble] norm stats: built-in fallback") return GLOBAL_MEAN, GLOBAL_STD NORM_MEAN, NORM_STD = _load_norm(CKPT_PATHS[0]) def metrics_from_cm(tp, fp, fn, tn): prec = tp / (tp + fp + 1e-9) rec = tp / (tp + fn + 1e-9) f1 = 2 * prec * rec / (prec + rec + 1e-9) iou = tp / (tp + fp + fn + 1e-9) dice = 2 * tp / (2 * tp + fp + fn + 1e-9) acc = (tp + tn) / (tp + tn + fp + fn + 1e-9) spec = tn / (tn + fp + 1e-9) return prec, rec, f1, iou, dice, acc, spec def predict_tta(model, X, batch_size): """Average sigmoid probs over the 8 dihedral (D4) transforms.""" acc = np.zeros((X.shape[0], X.shape[1], X.shape[2], 1), np.float32) n = 0 for flip in (False, True): for k in (0, 1, 2, 3): Xt = X[:, :, ::-1, :] if flip else X Xt = np.ascontiguousarray(np.rot90(Xt, k, axes=(1, 2))) p = model.predict(Xt, batch_size=batch_size, verbose=0) p = np.rot90(p, -k, axes=(1, 2)) if flip: p = p[:, :, ::-1, :] acc += p n += 1 return acc / n # ───────────────────────────────────────────────────────────────────────────── # Load + preprocess every test patch (.npy) # ───────────────────────────────────────────────────────────────────────────── feat_files = sorted(glob.glob(os.path.join(TEST_FEAT, '*.npy'))) mask_files = [os.path.join(TEST_MASK, os.path.basename(f)) for f in feat_files] for mf in mask_files: assert os.path.exists(mf), f"Missing mask: {mf}" print(f"\nLoading {len(feat_files)} test patches…") X, Y, ids = [], [], [] for fp, mp in zip(feat_files, mask_files): feat = np.load(fp).astype(np.float32) mask = np.load(mp).astype(np.float32) feat = np.where((feat == -9999) | ~np.isfinite(feat), 0, feat) if BAND_INDICES is not None: feat = feat[..., BAND_INDICES] feat = (feat - NORM_MEAN) / (NORM_STD + 1e-7) X.append(feat); Y.append(mask) ids.append(os.path.basename(fp).replace('.npy', '')) X = np.array(X, dtype=np.float32) Y = np.array(Y, dtype=np.float32) # ───────────────────────────────────────────────────────────────────────────── # Predict with each model, average # ───────────────────────────────────────────────────────────────────────────── model = build_model(input_shape=INPUT_SHAPE, num_classes=1, num_heads=8) Y_prob_sum = np.zeros((X.shape[0], X.shape[1], X.shape[2], 1), np.float32) for mi, ckpt in enumerate(CKPT_PATHS, 1): if not os.path.exists(ckpt): raise FileNotFoundError(f"Checkpoint not found: {ckpt}") model.load_weights(ckpt) print(f"[{mi}/{len(CKPT_PATHS)}] TTA predicting with {ckpt} …") Y_prob_sum += predict_tta(model, X, BATCH_SIZE) Y_prob = Y_prob_sum / len(CKPT_PATHS) # ensemble mean probability # ───────────────────────────────────────────────────────────────────────────── # Per-image metrics @ t=0.5 # ───────────────────────────────────────────────────────────────────────────── all_true, all_prob, per_image = [], [], [] for i, iid in enumerate(ids): yt = Y[i, :, :, 0].flatten().astype(np.int32) yprob = Y_prob[i, :, :, 0].flatten() all_true.append(yt); all_prob.append(yprob) yp = (yprob >= 0.5).astype(np.int32) tn, fp, fn, tp = confusion_matrix(yt, yp, labels=[0, 1]).ravel() prec, rec, f1, iou, dice, acc, spec = metrics_from_cm(tp, fp, fn, tn) if (tp + fp + fn) == 0: prec = rec = f1 = iou = dice = 1.0 per_image.append({ 'image_id': iid, 'glacier_frac_gt': round(float(yt.mean()), 4), 'TP': int(tp), 'FP': int(fp), 'FN': int(fn), 'TN': int(tn), 'precision': round(prec, 4), 'recall': round(rec, 4), 'f1_score': round(f1, 4), 'iou': round(iou, 4), 'dice': round(dice, 4), }) per_image_df = pd.DataFrame(per_image).sort_values('iou').reset_index(drop=True) per_image_df.to_csv(os.path.join(OUT_DIR, 'per_image_metrics.csv'), index=False) # ───────────────────────────────────────────────────────────────────────────── # Global threshold sweep # ───────────────────────────────────────────────────────────────────────────── y_true_flat = np.concatenate(all_true) y_prob_flat = np.concatenate(all_prob) rows = [] for t in THRESHOLDS: yp = (y_prob_flat >= t).astype(np.int32) tn, fp, fn, tp = confusion_matrix(y_true_flat, yp, labels=[0, 1]).ravel() prec, rec, f1, iou, dice, acc, spec = metrics_from_cm(tp, fp, fn, tn) rows.append({'threshold': t, 'precision': round(prec, 6), 'recall': round(rec, 6), 'f1_score': round(f1, 6), 'iou': round(iou, 6), 'dice': round(dice, 6)}) thresh_df = pd.DataFrame(rows) thresh_df.to_csv(os.path.join(OUT_DIR, 'evaluation_metrics.csv'), index=False) best_row = thresh_df.loc[thresh_df['iou'].idxmax()] best_t = float(best_row['threshold']) # Glacier-only mean (honest per-image number) gl = per_image_df[per_image_df['glacier_frac_gt'] > 0.01] with open(os.path.join(OUT_DIR, 'metrics.json'), 'w') as f: json.dump({ 'n_models': len(CKPT_PATHS), 'best_threshold': best_t, 'test_precision': round(float(best_row['precision']), 4), 'test_recall': round(float(best_row['recall']), 4), 'test_f1': round(float(best_row['f1_score']), 4), 'test_iou': round(float(best_row['iou']), 4), 'test_dice': round(float(best_row['dice']), 4), 'glacier_only_dice': round(float(gl['dice'].mean()), 4), 'glacier_only_iou': round(float(gl['iou'].mean()), 4), }, f, indent=2) # ───────────────────────────────────────────────────────────────────────────── # Summary # ───────────────────────────────────────────────────────────────────────────── lines = [ "=" * 60, f" ENSEMBLE EVALUATION — {len(CKPT_PATHS)} SwinUNet models", "=" * 60, "", f"Test patches : {len(ids)}", f"Best threshold by IoU : {best_t}", "", "GLOBAL (pixel-pooled) @ best threshold:", f" precision : {best_row['precision']:.4f}", f" recall : {best_row['recall']:.4f}", f" f1 : {best_row['f1_score']:.4f}", f" iou : {best_row['iou']:.4f}", f" dice : {best_row['dice']:.4f}", "", f"GLACIER-ONLY per-image mean ({len(gl)} patches):", f" dice : {gl['dice'].mean():.4f}", f" iou : {gl['iou'].mean():.4f}", "", "Threshold sweep:", " {:<8} {:<10} {:<10} {:<10} {:<10}".format("thresh", "precision", "recall", "iou", "dice"), " " + "-" * 52, ] for _, r in thresh_df.iterrows(): tag = " <- best" if r['threshold'] == best_t else "" lines.append(" {:<8} {:<10.4f} {:<10.4f} {:<10.4f} {:<10.4f}{}".format( r['threshold'], r['precision'], r['recall'], r['iou'], r['dice'], tag)) lines += ["", f"Output dir: {OUT_DIR}"] summary = "\n".join(lines) print("\n" + summary) with open(os.path.join(OUT_DIR, 'evaluation_summary.txt'), 'w') as f: f.write(summary) print("\nEnsemble evaluation complete.")