File size: 9,126 Bytes
5d14125 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 |
import os
import pandas as pd
import numpy as np
from PIL import Image
import torch
from torch.utils.data import Dataset, DataLoader
from transformers import ViTImageProcessor, ViTForImageClassification, TrainingArguments, Trainer
from sklearn.model_selection import train_test_split
from sklearn.preprocessing import LabelEncoder
from sklearn.metrics import accuracy_score, classification_report
import warnings
import platform
warnings.filterwarnings('ignore')
def get_device():
if torch.backends.mps.is_available() and torch.backends.mps.is_built():
print("π Using Apple Silicon MPS (Metal Performance Shaders)")
return torch.device("mps")
elif torch.cuda.is_available():
print("π Using CUDA GPU")
return torch.device("cuda")
else:
print("π» Using CPU")
return torch.device("cpu")
def optimize_for_apple_silicon():
if platform.machine() == 'arm64':
os.environ['PYTORCH_ENABLE_MPS_FALLBACK'] = '1'
if torch.backends.mps.is_available():
try:
if hasattr(torch.backends.mps, 'empty_cache'):
torch.backends.mps.empty_cache()
except AttributeError:
pass
print("β
Apple Silicon optimizations enabled")
class FetalPlaneDataset(Dataset):
def __init__(self, image_paths, labels, processor, transform=None):
self.image_paths = image_paths
self.labels = labels
self.processor = processor
self.transform = transform
def __len__(self):
return len(self.image_paths)
def __getitem__(self, idx):
try:
image_path = self.image_paths[idx]
image = Image.open(image_path).convert('RGB')
if self.transform:
image = self.transform(image)
inputs = self.processor(images=image, return_tensors="pt")
pixel_values = inputs['pixel_values'].squeeze()
return {
'pixel_values': pixel_values,
'labels': torch.tensor(self.labels[idx], dtype=torch.long)
}
except Exception as e:
print(f"Error loading image {image_path}: {e}")
return self.__getitem__((idx + 1) % len(self.image_paths))
def load_and_preprocess_data(data_dir):
csv_path = os.path.join(data_dir, 'FETAL_PLANES_DB_data.csv')
images_dir = os.path.join(data_dir, 'Images')
df = pd.read_csv(csv_path, delimiter=';')
df['image_path'] = df['Image_name'].apply(lambda x: os.path.join(images_dir, f"{x}.png"))
existing_images = df[df['image_path'].apply(os.path.exists)]
print(f"Found {len(existing_images)} existing images out of {len(df)} total entries")
existing_images['combined_label'] = existing_images['Plane'] + '_' + existing_images['Brain_plane']
label_encoder = LabelEncoder()
existing_images['encoded_label'] = label_encoder.fit_transform(existing_images['combined_label'])
print("\nLabel distribution:")
print(existing_images['combined_label'].value_counts())
return existing_images, label_encoder
def compute_metrics(eval_pred):
predictions, labels = eval_pred
predictions = np.argmax(predictions, axis=1)
return {'accuracy': accuracy_score(labels, predictions)}
def train_fetal_plane_classifier(data_dir, output_dir='./fetal_plane_model', epochs=10, batch_size=16):
print("π¬ Initializing Fetal Plane Classifier Training")
print("=" * 50)
optimize_for_apple_silicon()
device = get_device()
if device.type == 'mps':
batch_size = min(batch_size, 8)
print(f"π± Optimized batch size for Apple Silicon: {batch_size}")
print("Loading and preprocessing data...")
df, label_encoder = load_and_preprocess_data(data_dir)
model_name = "google/vit-base-patch16-224-in21k"
processor = ViTImageProcessor.from_pretrained(model_name)
num_labels = len(label_encoder.classes_)
model = ViTForImageClassification.from_pretrained(
model_name,
num_labels=num_labels,
ignore_mismatched_sizes=True
)
model = model.to(device)
print(f"π± Model moved to device: {device}")
train_df, val_df = train_test_split(
df,
test_size=0.2,
random_state=42,
stratify=df['encoded_label']
)
print(f"Training samples: {len(train_df)}")
print(f"Validation samples: {len(val_df)}")
train_dataset = FetalPlaneDataset(
train_df['image_path'].tolist(),
train_df['encoded_label'].tolist(),
processor
)
val_dataset = FetalPlaneDataset(
val_df['image_path'].tolist(),
val_df['encoded_label'].tolist(),
processor
)
training_args = TrainingArguments(
output_dir=output_dir,
num_train_epochs=epochs,
per_device_train_batch_size=batch_size,
per_device_eval_batch_size=batch_size,
warmup_steps=min(500, len(train_df) // (batch_size * 4)),
weight_decay=0.01,
logging_dir=f'{output_dir}/logs',
logging_steps=50,
evaluation_strategy="epoch",
save_strategy="epoch",
load_best_model_at_end=True,
metric_for_best_model="accuracy",
greater_is_better=True,
save_total_limit=2,
remove_unused_columns=False,
dataloader_pin_memory=False,
dataloader_num_workers=0 if device.type == 'mps' else 2,
fp16=False,
bf16=False,
use_mps_device=device.type == 'mps',
gradient_accumulation_steps=2 if device.type == 'mps' else 1,
max_grad_norm=1.0,
lr_scheduler_type="cosine",
learning_rate=5e-5 if device.type == 'mps' else 2e-5,
)
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset,
eval_dataset=val_dataset,
compute_metrics=compute_metrics,
)
print("Starting training...")
trainer.train()
print("Evaluating model...")
eval_results = trainer.evaluate()
print(f"Validation Accuracy: {eval_results['eval_accuracy']:.4f}")
print("Saving model and processor...")
model.save_pretrained(output_dir)
processor.save_pretrained(output_dir)
import joblib
joblib.dump(label_encoder, os.path.join(output_dir, 'label_encoder.pkl'))
print(f"Model saved to {output_dir}")
return model, processor, label_encoder, eval_results
def predict_fetal_plane(image_path, model_dir='./fetal_plane_model'):
device = get_device()
processor = ViTImageProcessor.from_pretrained(model_dir)
model = ViTForImageClassification.from_pretrained(model_dir)
model = model.to(device)
model.eval()
import joblib
label_encoder = joblib.load(os.path.join(model_dir, 'label_encoder.pkl'))
image = Image.open(image_path).convert('RGB')
inputs = processor(images=image, return_tensors="pt")
inputs = {k: v.to(device) for k, v in inputs.items()}
with torch.no_grad():
outputs = model(**inputs)
predictions = torch.nn.functional.softmax(outputs.logits, dim=-1)
predicted_class_idx = predictions.argmax().item()
confidence = predictions[0][predicted_class_idx].item()
predicted_label = label_encoder.inverse_transform([predicted_class_idx])[0]
return predicted_label, confidence
def main():
data_dir = '../datasets/FETAL_PLANES_ZENODO'
output_dir = '/Users/karthik/Projects/hackathon15092025/models/fetal_plane_model'
os.makedirs(output_dir, exist_ok=True)
print("π¬ Fetal Plane Classification Model Training")
print("π Optimized for Apple Silicon (M4 Chip)")
print("=" * 50)
device = get_device()
optimal_batch_size = 4 if device.type == 'mps' else 8
optimal_epochs = 3 if device.type == 'mps' else 5
print(f"π Training Configuration:")
print(f" - Device: {device}")
print(f" - Batch Size: {optimal_batch_size}")
print(f" - Epochs: {optimal_epochs}")
print(f" - Architecture: {platform.machine()}")
model, processor, label_encoder, results = train_fetal_plane_classifier(
data_dir=data_dir,
output_dir=output_dir,
epochs=optimal_epochs,
batch_size=optimal_batch_size
)
print("\nβ
Training completed successfully!")
print(f"Final validation accuracy: {results['eval_accuracy']:.4f}")
print("\nπ Available classes:")
for i, class_name in enumerate(label_encoder.classes_):
print(f"{i}: {class_name}")
sample_image = '/Users/karthik/Projects/hackathon15092025/FETAL_PLANES_ZENODO/Images/Patient00037_Plane1_1_of_3.png'
if os.path.exists(sample_image):
print(f"\nπ Testing prediction on sample image: {sample_image}")
predicted_label, confidence = predict_fetal_plane(sample_image, output_dir)
print(f"Predicted: {predicted_label} (Confidence: {confidence:.3f})")
if __name__ == "__main__":
main() |