| { | |
| "release_version": "1.0", | |
| "sv_features": [ | |
| "is_pass", | |
| "svtype_DEL", | |
| "svtype_DUP", | |
| "svtype_INS", | |
| "svtype_INV", | |
| "svtype_BND", | |
| "svlen_log", | |
| "cipos_width", | |
| "ciend_width", | |
| "is_imprecise", | |
| "pe_support", | |
| "sr_support", | |
| "total_support", | |
| "vaf", | |
| "gt_hom", | |
| "gq", | |
| "qual_norm", | |
| "local_depth", | |
| "gc_min", | |
| "gc_max", | |
| "entropy_min", | |
| "microhom_max", | |
| "in_segdup_either", | |
| "in_segdup_both", | |
| "in_difficult_either", | |
| "in_difficult_both", | |
| "in_lowmap_either", | |
| "in_tandem_either", | |
| "in_Alu_either", | |
| "in_L1_either", | |
| "in_SVA_either", | |
| "in_LTR_either", | |
| "frac_span_repeat", | |
| "n_neighbors", | |
| "nn_log_dist" | |
| ], | |
| "str_features": [ | |
| "is_pass", | |
| "motif_len", | |
| "ref_copynum", | |
| "gt_repcn_max", | |
| "gt_repcn_min", | |
| "expansion_over_ref", | |
| "repci_width_max", | |
| "spanning_reads", | |
| "flanking_reads", | |
| "inrepeat_reads", | |
| "locus_depth", | |
| "gt_hom", | |
| "ref_tract_bp", | |
| "spanning_frac", | |
| "allele_vs_readlen", | |
| "motif_is_homopolymer", | |
| "gc_flank", | |
| "entropy_flank", | |
| "in_segdup", | |
| "in_difficult", | |
| "flank_lowmap" | |
| ], | |
| "note": "Produced by feature_builder.py from a short-read VCF + reference FASTA + static BEDs; missing fields use the -99999 sentinel." | |
| } |