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| """ |
| Attributes testing module |
| |
| Covers all operations which access the .attrs property, with the |
| exception of data read/write and type conversion. Those operations |
| are tested by module test_attrs_data. |
| """ |
|
|
| import numpy as np |
|
|
| from collections.abc import MutableMapping |
|
|
| from .common import TestCase, ut |
|
|
| import h5py |
| from h5py import File |
| from h5py import h5a, h5t |
| from h5py import AttributeManager |
|
|
|
|
| class BaseAttrs(TestCase): |
|
|
| def setUp(self): |
| self.f = File(self.mktemp(), 'w') |
|
|
| def tearDown(self): |
| if self.f: |
| self.f.close() |
|
|
| class TestRepr(TestCase): |
|
|
| """ Feature: AttributeManager provide a helpful |
| __repr__ string |
| """ |
|
|
| def test_repr(self): |
| grp = self.f.create_group('grp') |
| grp.attrs.create('att', 1) |
| self.assertIsInstance(repr(grp.attrs), str) |
| grp.id.close() |
| self.assertIsInstance(repr(grp.attrs), str) |
|
|
|
|
| class TestAccess(BaseAttrs): |
|
|
| """ |
| Feature: Attribute creation/retrieval via special methods |
| """ |
|
|
| def test_create(self): |
| """ Attribute creation by direct assignment """ |
| self.f.attrs['a'] = 4.0 |
| self.assertEqual(list(self.f.attrs.keys()), ['a']) |
| self.assertEqual(self.f.attrs['a'], 4.0) |
|
|
| def test_create_2(self): |
| """ Attribute creation by create() method """ |
| self.f.attrs.create('a', 4.0) |
| self.assertEqual(list(self.f.attrs.keys()), ['a']) |
| self.assertEqual(self.f.attrs['a'], 4.0) |
|
|
| def test_modify(self): |
| """ Attributes are modified by direct assignment""" |
| self.f.attrs['a'] = 3 |
| self.assertEqual(list(self.f.attrs.keys()), ['a']) |
| self.assertEqual(self.f.attrs['a'], 3) |
| self.f.attrs['a'] = 4 |
| self.assertEqual(list(self.f.attrs.keys()), ['a']) |
| self.assertEqual(self.f.attrs['a'], 4) |
|
|
| def test_modify_2(self): |
| """ Attributes are modified by modify() method """ |
| self.f.attrs.modify('a',3) |
| self.assertEqual(list(self.f.attrs.keys()), ['a']) |
| self.assertEqual(self.f.attrs['a'], 3) |
|
|
| self.f.attrs.modify('a', 4) |
| self.assertEqual(list(self.f.attrs.keys()), ['a']) |
| self.assertEqual(self.f.attrs['a'], 4) |
|
|
| |
| self.f.attrs.modify('b', 5) |
| self.assertEqual(list(self.f.attrs.keys()), ['a', 'b']) |
| self.assertEqual(self.f.attrs['a'], 4) |
| self.assertEqual(self.f.attrs['b'], 5) |
|
|
| |
| new_value = np.arange(5) |
| with self.assertRaises(TypeError): |
| self.f.attrs.modify('b', new_value) |
|
|
| def test_overwrite(self): |
| """ Attributes are silently overwritten """ |
| self.f.attrs['a'] = 4.0 |
| self.f.attrs['a'] = 5.0 |
| self.assertEqual(self.f.attrs['a'], 5.0) |
|
|
| def test_rank(self): |
| """ Attribute rank is preserved """ |
| self.f.attrs['a'] = (4.0, 5.0) |
| self.assertEqual(self.f.attrs['a'].shape, (2,)) |
| self.assertArrayEqual(self.f.attrs['a'], np.array((4.0,5.0))) |
|
|
| def test_single(self): |
| """ Attributes of shape (1,) don't become scalars """ |
| self.f.attrs['a'] = np.ones((1,)) |
| out = self.f.attrs['a'] |
| self.assertEqual(out.shape, (1,)) |
| self.assertEqual(out[()], 1) |
|
|
| def test_access_exc(self): |
| """ Attempt to access missing item raises KeyError """ |
| with self.assertRaises(KeyError): |
| self.f.attrs['a'] |
|
|
| def test_get_id(self): |
| self.f.attrs['a'] = 4.0 |
| aid = self.f.attrs.get_id('a') |
| assert isinstance(aid, h5a.AttrID) |
|
|
| with self.assertRaises(KeyError): |
| self.f.attrs.get_id('b') |
|
|
| class TestDelete(BaseAttrs): |
|
|
| """ |
| Feature: Deletion of attributes using __delitem__ |
| """ |
|
|
| def test_delete(self): |
| """ Deletion via "del" """ |
| self.f.attrs['a'] = 4.0 |
| self.assertIn('a', self.f.attrs) |
| del self.f.attrs['a'] |
| self.assertNotIn('a', self.f.attrs) |
|
|
| def test_delete_exc(self): |
| """ Attempt to delete missing item raises KeyError """ |
| with self.assertRaises(KeyError): |
| del self.f.attrs['a'] |
|
|
|
|
| class TestUnicode(BaseAttrs): |
|
|
| """ |
| Feature: Attributes can be accessed via Unicode or byte strings |
| """ |
|
|
| def test_ascii(self): |
| """ Access via pure-ASCII byte string """ |
| self.f.attrs[b"ascii"] = 42 |
| out = self.f.attrs[b"ascii"] |
| self.assertEqual(out, 42) |
|
|
| def test_raw(self): |
| """ Access via non-ASCII byte string """ |
| name = b"non-ascii\xfe" |
| self.f.attrs[name] = 42 |
| out = self.f.attrs[name] |
| self.assertEqual(out, 42) |
|
|
| def test_unicode(self): |
| """ Access via Unicode string with non-ascii characters """ |
| name = "Omega" + chr(0x03A9) |
| self.f.attrs[name] = 42 |
| out = self.f.attrs[name] |
| self.assertEqual(out, 42) |
|
|
|
|
| class TestCreate(BaseAttrs): |
|
|
| """ |
| Options for explicit attribute creation |
| """ |
|
|
| def test_named(self): |
| """ Attributes created from named types link to the source type object |
| """ |
| self.f['type'] = np.dtype('u8') |
| self.f.attrs.create('x', 42, dtype=self.f['type']) |
| self.assertEqual(self.f.attrs['x'], 42) |
| aid = h5a.open(self.f.id, b'x') |
| htype = aid.get_type() |
| htype2 = self.f['type'].id |
| self.assertEqual(htype, htype2) |
| self.assertTrue(htype.committed()) |
|
|
| def test_empty(self): |
| |
| """ Create attribute with h5py.Empty value |
| """ |
| self.f.attrs.create('empty', h5py.Empty('f')) |
| self.assertEqual(self.f.attrs['empty'], h5py.Empty('f')) |
|
|
| self.f.attrs.create('empty', h5py.Empty(None)) |
| self.assertEqual(self.f.attrs['empty'], h5py.Empty(None)) |
|
|
| class TestMutableMapping(BaseAttrs): |
| '''Tests if the registration of AttributeManager as a MutableMapping |
| behaves as expected |
| ''' |
| def test_resolution(self): |
| assert issubclass(AttributeManager, MutableMapping) |
| assert isinstance(self.f.attrs, MutableMapping) |
|
|
| def test_validity(self): |
| ''' |
| Test that the required functions are implemented. |
| ''' |
| AttributeManager.__getitem__ |
| AttributeManager.__setitem__ |
| AttributeManager.__delitem__ |
| AttributeManager.__iter__ |
| AttributeManager.__len__ |
|
|
| class TestVlen(BaseAttrs): |
| def test_vlen(self): |
| a = np.array([np.arange(3), np.arange(4)], |
| dtype=h5t.vlen_dtype(int)) |
| self.f.attrs['a'] = a |
| self.assertArrayEqual(self.f.attrs['a'][0], a[0]) |
|
|
| def test_vlen_s1(self): |
| dt = h5py.vlen_dtype(np.dtype('S1')) |
| a = np.empty((1,), dtype=dt) |
| a[0] = np.array([b'a', b'b'], dtype='S1') |
|
|
| self.f.attrs.create('test', a) |
| self.assertArrayEqual(self.f.attrs['test'][0], a[0]) |
|
|
|
|
| class TestTrackOrder(BaseAttrs): |
| def fill_attrs(self, track_order): |
| attrs = self.f.create_group('test', track_order=track_order).attrs |
| for i in range(100): |
| attrs[str(i)] = i |
| return attrs |
|
|
| @ut.skipUnless(h5py.version.hdf5_version_tuple >= (1, 10, 6), 'HDF5 1.10.6 required') |
| |
| def test_track_order(self): |
| attrs = self.fill_attrs(track_order=True) |
| self.assertEqual(list(attrs), |
| [str(i) for i in range(100)]) |
|
|
| def test_no_track_order(self): |
| attrs = self.fill_attrs(track_order=False) |
| self.assertEqual(list(attrs), |
| sorted([str(i) for i in range(100)])) |
|
|
| def fill_attrs2(self, track_order): |
| group = self.f.create_group('test', track_order=track_order) |
| for i in range(12): |
| group.attrs[str(i)] = i |
| return group |
|
|
| @ut.skipUnless(h5py.version.hdf5_version_tuple >= (1, 10, 6), 'HDF5 1.10.6 required') |
| def test_track_order_overwrite_delete(self): |
| |
| group = self.fill_attrs2(track_order=True) |
| self.assertEqual(group.attrs["11"], 11) |
| |
| group.attrs['11'] = 42.0 |
| self.assertEqual(group.attrs["11"], 42.0) |
| |
| self.assertIn('10', group.attrs) |
| del group.attrs['10'] |
| self.assertNotIn('10', group.attrs) |
|
|
|
|
| class TestDatatype(BaseAttrs): |
|
|
| def test_datatype(self): |
| self.f['foo'] = np.dtype('f') |
| dt = self.f['foo'] |
| self.assertEqual(list(dt.attrs.keys()), []) |
| dt.attrs.create('a', 4.0) |
| self.assertEqual(list(dt.attrs.keys()), ['a']) |
| self.assertEqual(list(dt.attrs.values()), [4.0]) |
|
|
| def test_python_int_uint64(writable_file): |
| f = writable_file |
| data = [np.iinfo(np.int64).max, np.iinfo(np.int64).max + 1] |
|
|
| |
| f.attrs.create('a', data, dtype=np.uint64) |
| assert f.attrs['a'].dtype == np.dtype(np.uint64) |
| np.testing.assert_array_equal(f.attrs['a'], np.array(data, dtype=np.uint64)) |
|
|
| |
| f.attrs.modify('a', data) |
| np.testing.assert_array_equal(f.attrs['a'], np.array(data, dtype=np.uint64)) |
|
|