File size: 868 Bytes
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"genome": "reference/hg38.genome.fa",
"bigwig": "data/ENCSR679EFH.bigWig",
"peaks": "chrombppnet_model_encsr283tme_bias//filtered.peaks.bed",
"nonpeaks": "chrombppnet_model_encsr283tme_bias//filtered.nonpeaks.bed",
"output_prefix": "chrombppnet_model_encsr283tme_bias//chrombpnet",
"chr_fold_path": "splits/fold_0.json",
"trackables": [
"logcount_predictions_loss",
"loss",
"logits_profile_predictions_loss",
"val_logcount_predictions_loss",
"val_loss",
"val_logits_profile_predictions_loss"
],
"epochs": 50,
"early_stop": 5,
"batch_size": 64,
"learning_rate": 0.001,
"params": "chrombppnet_model_encsr283tme_bias//chrombpnet_model_params.tsv",
"seed": 1234,
"architecture_from_file": "/scratch/chrombpnet/src/training/models/chrombpnet_with_bias_model.py"
} |