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7d3865c | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 | {
"genome": "/scratch/groups/akundaje/anusri/chromatin_atlas/reference/hg38.genome.fa",
"bigwig": "/oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR679EFH//preprocessing/bigWigs/ENCSR679EFH.bigWig",
"peaks": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR679EFH//chrombppnet_model_encsr283tme_bias_fold_2//filtered.peaks.bed",
"nonpeaks": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR679EFH//chrombppnet_model_encsr283tme_bias_fold_2//filtered.nonpeaks.bed",
"output_prefix": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR679EFH//chrombppnet_model_encsr283tme_bias_fold_2//chrombpnet",
"chr_fold_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_2.json",
"trackables": [
"logcount_predictions_loss",
"loss",
"logits_profile_predictions_loss",
"val_logcount_predictions_loss",
"val_loss",
"val_logits_profile_predictions_loss"
],
"epochs": 50,
"early_stop": 5,
"batch_size": 64,
"learning_rate": 0.001,
"params": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR679EFH//chrombppnet_model_encsr283tme_bias_fold_2//chrombpnet_model_params.tsv",
"seed": 1234,
"architecture_from_file": "/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/models/chrombpnet_with_bias_model.py"
} |