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"genome": "/scratch/groups/akundaje/anusri/chromatin_atlas/reference/hg38.genome.fa",
"bigwig": "/oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR679EFH//preprocessing/bigWigs/ENCSR679EFH.bigWig",
"peaks": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR679EFH//chrombppnet_model_encsr283tme_bias_fold_4//filtered.peaks.bed",
"nonpeaks": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR679EFH//chrombppnet_model_encsr283tme_bias_fold_4//filtered.nonpeaks.bed",
"output_prefix": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR679EFH//chrombppnet_model_encsr283tme_bias_fold_4//chrombpnet",
"chr_fold_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_4.json",
"trackables": [
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"loss",
"logits_profile_predictions_loss",
"val_logcount_predictions_loss",
"val_loss",
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],
"epochs": 50,
"early_stop": 5,
"batch_size": 64,
"learning_rate": 0.001,
"params": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR679EFH//chrombppnet_model_encsr283tme_bias_fold_4//chrombpnet_model_params.tsv",
"seed": 1234,
"architecture_from_file": "/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/models/chrombpnet_with_bias_model.py"
} |