Add model card (README.md)
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README.md
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| 1 |
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---
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| 2 |
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license: mit
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| 3 |
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tags:
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| 4 |
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- eeg
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| 5 |
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- depression
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- mental-health
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- mdd
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| 8 |
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- biosignals
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| 9 |
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- ensemble
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| 10 |
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- pytorch
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- xgboost
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- svm
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- neuroscience
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datasets:
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- figshare-eeg-depression
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metrics:
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| 17 |
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- accuracy
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- roc_auc
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- f1
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language: []
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model-index:
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- name: EEG Depression Detection V4
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results:
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- task:
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type: classification
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name: EEG-based MDD Detection
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dataset:
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name: Figshare EEG Depression (64 subjects, LOSO CV)
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type: figshare-eeg-depression
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metrics:
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- type: accuracy
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value: 0.9062
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name: Subject Accuracy (threshold=0.5)
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- type: accuracy
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value: 0.9688
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name: Subject Accuracy (threshold=0.575)
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- type: roc_auc
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value: 0.9980
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name: AUC-ROC
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- type: f1
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value: 0.9714
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name: F1 Score (threshold=0.575)
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---
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# EEG-Based Depression (MDD) Detection — V4 Ensemble
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**Leave-One-Subject-Out (LOSO) cross-validated EEG classifier for Major Depressive
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Disorder, achieving 96.88 % subject-level accuracy and 99.80 % AUC-ROC on 64 subjects
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from the public figshare EEG dataset.**
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---
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## Model Architecture
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This is a **3-model heterogeneous ensemble**:
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| Component | Details |
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|-----------|---------|
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| **1D-CNN** (weight=0.60) | Multi-scale convolution stem → 4 × ResBlock1D + SEBlock1D → GlobalAvgPool → MLP. Input: raw EEG (19 ch × 1000 samples). |
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| **XGBoost** (weight=0.25) | 800 estimators, max_depth=6, trained on 1047-dim handcrafted features. |
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| **SVM** (weight=0.15) | RBF kernel (C=10, γ=scale), trained on the same 1047-dim features. |
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Epoch-level probabilities from each model are aggregated as a weighted sum, then
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subject-level probability is the trimmed mean (5 % trim) of epoch probabilities.
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### Handcrafted Feature Set (1047 dimensions)
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| Group | Dims | Description |
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|-------|------|-------------|
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| 70 |
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| Spectral power | 95 | Band power per channel (δ/θ/α/β/γ) |
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| 71 |
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| Temporal stats | 171 | Mean, variance, skewness, kurtosis, Hjorth params, zero-crossing rate |
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| Wavelet / WPD | 304 | Wavelet Packet Decomposition energy + entropy |
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| Connectivity | 342 | Phase Locking Value + coherence between all channel pairs |
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| Asymmetry | 40 | Frontal/temporal α asymmetry (8 electrode pairs) |
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| Band ratios | 95 | Cross-band power ratios per channel |
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---
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## Performance (LOSO Cross-Validation, 64 subjects)
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| Metric | Threshold=0.50 | Threshold=0.575 |
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|--------|---------------|-----------------|
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| Subject Accuracy | **90.62 %** (58/64) | **96.88 %** (62/64) |
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| AUC-ROC | **99.80 %** | **99.80 %** |
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| Sensitivity (MDD recall) | 100 % | 100 % |
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| Specificity (Healthy recall) | 80.0 % | 93.3 % |
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| F1 Score | 93.15 % | 97.14 % |
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*Post-hoc threshold optimisation on LOSO predictions (threshold=0.575) yields 96.88 %
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accuracy while maintaining 100 % sensitivity — no MDD subject is ever missed.*
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---
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## Dataset
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- **Source**: [figshare EEG dataset](https://figshare.com/articles/dataset/EEG_Data_New/4244171)
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- **Subjects**: 64 (34 MDD, 30 Healthy Controls)
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- **EDF files**: 181
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- **Channels**: 19 (standard 10-20 system)
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- **Signal**: Bandpass 1–45 Hz, notch 50/60 Hz, resampled to 250 Hz
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- **Epochs**: 4 s, 50 % overlap → ~570 epochs/subject on average
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- **Total epochs**: 36,247
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---
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## Repository Files
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```
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models/
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final/
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cnn_final.pt # CNN state dict (trained on all 64 subjects)
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xgboost_final.json # XGBoost model (all 64 subjects)
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svm_and_scaler_final.pkl # SVM + StandardScaler (all 64 subjects)
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fold_NN_SID/ # One directory per LOSO fold (64 total)
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cnn_weights.pt
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xgboost.json
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svm_and_scaler.pkl
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checkpoints/
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fold_NN_SID.pkl # Per-fold LOSO results (probs, labels, metrics)
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config/
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model_config.yaml
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data_config.yaml
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training_config.yaml
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results_best.json # Full LOSO metrics from training
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test_loso_results.json # Metrics from test_loso.py
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```
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---
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## Usage
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### Load CNN
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```python
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import torch
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from eeg_depression_detection.models.full_model import EEG1DCNN # adjust import path
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CNN_CONFIG = dict(
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n_channels=19,
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n_samples=1000,
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n_classes=2,
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)
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model = EEG1DCNN(**CNN_CONFIG)
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state = torch.load("models/final/cnn_final.pt", map_location="cpu")
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model.load_state_dict(state)
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model.eval()
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```
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### Load XGBoost
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```python
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import xgboost as xgb
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xgb_model = xgb.XGBClassifier()
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xgb_model.load_model("models/final/xgboost_final.json")
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```
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### Load SVM + Scaler
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```python
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import pickle
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with open("models/final/svm_and_scaler_final.pkl", "rb") as f:
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bundle = pickle.load(f)
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svm_model = bundle["svm"]
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scaler = bundle["scaler"]
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```
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---
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## Citation
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If you use this model or dataset pipeline in your research, please cite:
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```bibtex
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@misc{eeg_depression_v4,
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author = {Pranav},
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title = {EEG Depression Detection V4 Ensemble},
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year = {2026},
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publisher = {HuggingFace},
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howpublished = {\url{https://huggingface.co/lebiraja/eeg-depression-v4}},
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}
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```
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---
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## Licence
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MIT — see [LICENSE](https://github.com/pranov888/eeg-depression/blob/main/LICENSE)
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*Generated 2026-03-11*
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