config.json

{
  "architectures": [
    "ProteinVec"
  ],
  "bp_activation": "relu",
  "bp_d_model": 1024,
  "bp_dim_feedforward": 2048,
  "bp_dropout": 0.1,
  "bp_lr0": 0.0001,
  "bp_nhead": 4,
  "bp_num_layers": 4,
  "bp_num_variables": 10,
  "bp_out_dim": 512,
  "bp_p_bernoulli": 0.5,
  "bp_vocab": 20,
  "bp_warmup_steps": 500,
  "cc_activation": "relu",
  "cc_d_model": 1024,
  "cc_dim_feedforward": 2048,
  "cc_dropout": 0.1,
  "cc_lr0": 0.0001,
  "cc_nhead": 4,
  "cc_num_layers": 4,
  "cc_num_variables": 10,
  "cc_out_dim": 512,
  "cc_p_bernoulli": 0.5,
  "cc_vocab": 20,
  "cc_warmup_steps": 500,
  "classifier_dropout": 0.0,
  "d_ff": 16384,
  "d_kv": 128,
  "d_model": 1024,
  "dense_act_fn": "relu",
  "dropout_rate": 0.1,
  "ec_activation": "relu",
  "ec_d_model": 1024,
  "ec_dim_feedforward": 2048,
  "ec_dropout": 0.1,
  "ec_lr0": 0.0001,
  "ec_nhead": 4,
  "ec_num_layers": 2,
  "ec_num_variables": 10,
  "ec_out_dim": 512,
  "ec_p_bernoulli": 0.5,
  "ec_vocab": 20,
  "ec_warmup_steps": 500,
  "eos_token_id": 1,
  "feed_forward_proj": "relu",
  "gene3d_activation": "relu",
  "gene3d_d_model": 1024,
  "gene3d_dim_feedforward": 2048,
  "gene3d_dropout": 0.1,
  "gene3d_lr0": 0.0001,
  "gene3d_nhead": 4,
  "gene3d_num_layers": 2,
  "gene3d_num_variables": 10,
  "gene3d_out_dim": 512,
  "gene3d_p_bernoulli": 0.5,
  "gene3d_vocab": 20,
  "gene3d_warmup_steps": 500,
  "initializer_factor": 1.0,
  "is_gated_act": false,
  "layer_norm_epsilon": 1e-06,
  "mf_activation": "relu",
  "mf_d_model": 1024,
  "mf_dim_feedforward": 2048,
  "mf_dropout": 0.1,
  "mf_lr0": 0.0001,
  "mf_nhead": 4,
  "mf_num_layers": 4,
  "mf_num_variables": 10,
  "mf_out_dim": 512,
  "mf_p_bernoulli": 0.5,
  "mf_vocab": 20,
  "mf_warmup_steps": 500,
  "model_type": "t5",
  "num_decoder_layers": 24,
  "num_heads": 32,
  "num_layers": 24,
  "pad_token_id": 0,
  "pfam_activation": "relu",
  "pfam_d_model": 1024,
  "pfam_dim_feedforward": 2048,
  "pfam_dropout": 0.1,
  "pfam_lr0": 0.0001,
  "pfam_nhead": 4,
  "pfam_num_layers": 2,
  "pfam_num_variables": 10,
  "pfam_out_dim": 512,
  "pfam_p_bernoulli": 0.5,
  "pfam_vocab": 20,
  "pfam_warmup_steps": 500,
  "relative_attention_max_distance": null,
  "relative_attention_num_buckets": 32,
  "tm_activation": "relu",
  "tm_d_model": 1024,
  "tm_dim_feedforward": 2048,
  "tm_dropout": 0.1,
  "tm_lr0": 0.0001,
  "tm_nhead": 4,
  "tm_num_layers": 4,
  "tm_out_dim": 512,
  "tm_warmup_steps": 300,
  "torch_dtype": "float32",
  "transformers_version": "4.38.1",
  "use_cache": true,
  "vec_activation": "relu",
  "vec_d_model": 512,
  "vec_dim_feedforward": 2048,
  "vec_dropout": 0.1,
  "vec_lr0": 0.0001,
  "vec_nhead": 4,
  "vec_num_layers": 2,
  "vec_num_variables": 10,
  "vec_out_dim": 512,
  "vec_p_bernoulli": 0.5,
  "vec_vocab": 20,
  "vec_warmup_steps": 500,
  "vocab_size": 128,
  "inference_mask":"ALL",
}