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Flatten checkpoints layout: vlm/, grounding_dino/, refinenet/ hold core files directly

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  2. checkpoints/refinenet/.gitkeep +0 -0
  3. checkpoints/refinenet/run_iter132_submission/checkpoints/proposal_adapter_full.pt +0 -3
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  17. checkpoints/vlm/uAI-NEXUS-MedVLM-1.0a-7B-RL/model.safetensors.index.json +0 -737
  18. checkpoints/vlm/uAI-NEXUS-MedVLM-1.0a-7B-RL/preprocessor_config.json +0 -39
  19. checkpoints/vlm/uAI-NEXUS-MedVLM-1.0a-7B-RL/special_tokens_map.json +0 -31
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  22. checkpoints/vlm/uAI-NEXUS-MedVLM-1.0a-7B-RL/video_preprocessor_config.json +0 -43
  23. checkpoints/vlm/uAI-NEXUS-MedVLM-1.0a-7B-RL/vocab.json +0 -0
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checkpoints/vlm/uAI-NEXUS-MedVLM-1.0a-7B-RL/README.md DELETED
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- ---
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- language:
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- - en
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- license: apache-2.0
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- base_model: Qwen/Qwen2.5-VL-7B-Instruct
6
- tags:
7
- - medical
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- - video understanding
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- - vision-language
10
- - temporal action localization
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- - GRPO
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- - reinforcement learning
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- pipeline_tag: visual-question-answering
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- ---
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-
16
- # uAI-NEXUS-MedVLM-1.0a-7B-RL
17
-
18
- > **Accepted at CVPR 2026** 🎉
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-
20
- **Base Model**: [Qwen2.5-VL-7B-Instruct](https://huggingface.co/Qwen/Qwen2.5-VL-7B-Instruct)
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-
22
- `uAI-NEXUS-MedVLM-1.0a-7B-RL` is a medical-video understanding model fine-tuned from Qwen2.5-VL-7B-Instruct. It is the 7B-RL member of the **uAI-NEXUS-MedVLM 1.0** family (variant **a** = Qwen2.5-VL base; variants **b** / **c** use Qwen3-VL-4B and Qwen3.5-4B respectively). Training uses a two-stage pipeline:
23
-
24
- 1. **Supervised Fine-Tuning (SFT)** on medical video QA data.
25
- 2. **Group Relative Policy Optimization (GRPO)** with task-specific rewards for temporal precision and clinical semantics.
26
-
27
- It achieves state-of-the-art performance on medical video understanding across temporal action localization, spatiotemporal grounding, video summarization, region captioning, and surgical skill/CVS assessment.
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-
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- - **📄 Paper**: [arXiv:2512.06581](https://arxiv.org/abs/2512.06581)
30
- - **🌐 Project Page**: [uii-ai.github.io/MedGRPO](https://uii-ai.github.io/MedGRPO/)
31
- - **💻 Code**: [github.com/UII-AI/MedGRPO-Code](https://github.com/UII-AI/MedGRPO-Code)
32
- - **🤗 Dataset**: [UII-AI/MedVidBench](https://huggingface.co/datasets/UII-AI/MedVidBench)
33
- - **📊 Leaderboard**: [UII-AI/MedVidBench-Leaderboard](https://huggingface.co/spaces/UII-AI/MedVidBench-Leaderboard)
34
-
35
- ## Model Details
36
-
37
- - **Architecture**: Qwen2.5-VL (7B parameters) — video + text
38
- - **Base Model**: [Qwen/Qwen2.5-VL-7B-Instruct](https://huggingface.co/Qwen/Qwen2.5-VL-7B-Instruct)
39
- - **Training**: SFT → GRPO
40
- - **Domain**: Medical and surgical video understanding
41
- - **License**: Apache 2.0
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-
43
- ## Supported Tasks
44
-
45
- The model handles 8 medical video understanding tasks (11 variants):
46
-
47
- | Task Category | Tasks |
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- |---|---|
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- | **Temporal Understanding** | Temporal Action Localization (TAL), Spatiotemporal Grounding (STG), Next Action Prediction |
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- | **Captioning** | Dense Captioning (GPT / Gemini), Video Summary (GPT / Gemini), Region Caption (GPT / Gemini) |
51
- | **Assessment** | Skill Assessment, CVS (Critical View of Safety) |
52
-
53
- ## Training Data
54
-
55
- Trained on 51,505 balanced video-instruction pairs (the MedVidBench Standard split), spanning 8 source datasets: AVOS, CholecT50, CholecTrack20, Cholec80-CVS, CoPESD, EgoSurgery, JIGSAWS, NurViD.
56
-
57
- Stage 2 (GRPO) uses task-balanced subsets of the Standard split (detailed in the paper).
58
-
59
- ## Training Details
60
-
61
- ### Stage 1 — Supervised Fine-Tuning
62
-
63
- - **Objective**: Learn medical video understanding from human-annotated QA pairs.
64
- - **Optimizer**: AdamW with linear learning-rate schedule.
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-
66
- ### Stage 2 — Group Relative Policy Optimization (GRPO)
67
-
68
- - **Objective**: Improve temporal precision and clinical semantic quality with RL.
69
- - **Reward functions**:
70
- - **TAL / STG**: Logistic-normalized IoU (dataset-fair, IQR-based).
71
- - **Video Summary / Region Caption**: Semantic similarity (SentenceBERT).
72
- - **Next Action**: Exact-match reward.
73
- - **Skill / CVS Assessment**: Score-based reward.
74
- - **Framework**: [EasyR1](https://github.com/hiyouga/EasyR1) (built on [verl](https://github.com/volcengine/verl) by ByteDance).
75
-
76
- ## Usage
77
-
78
- ### Install
79
-
80
- ```bash
81
- pip install transformers accelerate torch pillow qwen-vl-utils
82
- ```
83
-
84
- ### Inference with Transformers
85
-
86
- ```python
87
- import torch
88
- from transformers import Qwen2_5_VLForConditionalGeneration, AutoProcessor
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- from qwen_vl_utils import process_vision_info
90
-
91
- model = Qwen2_5_VLForConditionalGeneration.from_pretrained(
92
- "UII-AI/uAI-NEXUS-MedVLM-1.0a-7B-RL",
93
- torch_dtype=torch.bfloat16,
94
- device_map="auto",
95
- )
96
- processor = AutoProcessor.from_pretrained("UII-AI/uAI-NEXUS-MedVLM-1.0a-7B-RL")
97
-
98
- video_frames = ["frame_0001.jpg", "frame_0002.jpg", "frame_0003.jpg"] # list of frame paths
99
-
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- messages = [{
101
- "role": "user",
102
- "content": [
103
- {"type": "video", "video": video_frames},
104
- {"type": "text", "text": "When does the surgeon grasp the gallbladder? Provide start and end times in seconds."},
105
- ],
106
- }]
107
-
108
- text = processor.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)
109
- image_inputs, video_inputs = process_vision_info(messages)
110
- inputs = processor(
111
- text=[text], images=image_inputs, videos=video_inputs,
112
- padding=True, return_tensors="pt",
113
- ).to(model.device)
114
-
115
- with torch.no_grad():
116
- output_ids = model.generate(**inputs, max_new_tokens=256)
117
- generated_ids = [out[len(inp):] for inp, out in zip(inputs.input_ids, output_ids)]
118
- response = processor.batch_decode(generated_ids, skip_special_tokens=True)[0]
119
-
120
- print(response)
121
- # Example: "The surgeon grasps the gallbladder from 45.2 to 58.7 seconds."
122
- ```
123
-
124
- ### Batch Inference with VLLM
125
-
126
- For full batch inference with correct video frame handling, use the reference pipeline at [UII-AI/MedGRPO-Code](https://github.com/UII-AI/MedGRPO-Code):
127
-
128
- ```bash
129
- git clone https://github.com/UII-AI/MedGRPO-Code
130
- cd MedGRPO-Code
131
- pip install -r requirements.txt
132
- bash run_inference.sh
133
- ```
134
-
135
- ## Performance
136
-
137
- Evaluated on [MedVidBench](https://huggingface.co/datasets/UII-AI/MedVidBench) (6,245 test samples across 8 tasks). GRPO consistently improves the SFT baseline on:
138
-
139
- - Temporal precision for TAL / STG (higher IoU).
140
- - Semantic quality for video summaries and region captions.
141
- - Alignment with expert annotations for skill / CVS assessment.
142
-
143
- Submit predictions to the [MedVidBench Leaderboard](https://huggingface.co/spaces/UII-AI/MedVidBench-Leaderboard) to benchmark your own models.
144
-
145
- ## Limitations
146
-
147
- - **Domain**: Optimized for medical / surgical videos; may not generalize to other domains.
148
- - **Temporal Resolution**: Best on videos sampled at 0.1–1.0 FPS.
149
- - **Language**: Trained primarily on English medical terminology.
150
- - **Video Length**: Optimal for videos of a few minutes; longer videos rely on frame sub-sampling.
151
-
152
- ## License
153
-
154
- Released under the Apache 2.0 License.
155
-
156
- ## Citation
157
-
158
- If you use this model or the MedVidBench benchmark, please cite:
159
-
160
- ```bibtex
161
- @inproceedings{su2026medgrpo,
162
- title = {{MedGRPO}: Multi-Task Reinforcement Learning for Heterogeneous Medical Video Understanding},
163
- author = {Su, Yuhao and Choudhuri, Anwesa and Gao, Zhongpai and Planche, Benjamin and
164
- Nguyen, Van Nguyen and Zheng, Meng and Shen, Yuhan and Innanje, Arun and
165
- Chen, Terrence and Elhamifar, Ehsan and Wu, Ziyan},
166
- booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)},
167
- year = {2026}
168
- }
169
- ```
170
-
171
- ## Acknowledgments
172
-
173
- - Base model: [Qwen2.5-VL-7B-Instruct](https://huggingface.co/Qwen/Qwen2.5-VL-7B-Instruct) by Alibaba Cloud.
174
- - Training framework: [EasyR1](https://github.com/hiyouga/EasyR1) (built on [verl](https://github.com/volcengine/verl)).
175
-
176
- ## Contact
177
-
178
- Open an issue on the [GitHub repository](https://github.com/UII-AI/MedGRPO-Code).
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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