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environment.yml

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+name: finben
+channels:
+  - conda-forge
+  - bioconda
+dependencies:
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=2_gnu
+  - _python_abi3_support=1.0=hd8ed1ab_2
+  - anyio=4.10.0=pyhe01879c_0
+  - argon2-cffi=25.1.0=pyhd8ed1ab_0
+  - argon2-cffi-bindings=25.1.0=py312h4c3975b_0
+  - arrow=1.3.0=pyhd8ed1ab_1
+  - asttokens=3.0.0=pyhd8ed1ab_1
+  - async-lru=2.0.5=pyh29332c3_0
+  - attrs=25.3.0=pyh71513ae_0
+  - babel=2.17.0=pyhd8ed1ab_0
+  - beautifulsoup4=4.13.5=pyha770c72_0
+  - bleach=6.2.0=pyh29332c3_4
+  - bleach-with-css=6.2.0=h82add2a_4
+  - brotli-python=1.1.0=py312h1289d80_4
+  - bzip2=1.0.8=h4bc722e_7
+  - ca-certificates=2025.8.3=hbd8a1cb_0
+  - cached-property=1.5.2=hd8ed1ab_1
+  - cached_property=1.5.2=pyha770c72_1
+  - certifi=2025.8.3=pyhd8ed1ab_0
+  - cffi=1.17.1=py312h35888ee_1
+  - charset-normalizer=3.4.3=pyhd8ed1ab_0
+  - comm=0.2.3=pyhe01879c_0
+  - cpython=3.12.11=py312hd8ed1ab_0
+  - debugpy=1.8.16=py312h8285ef7_1
+  - decorator=5.2.1=pyhd8ed1ab_0
+  - defusedxml=0.7.1=pyhd8ed1ab_0
+  - exceptiongroup=1.3.0=pyhd8ed1ab_0
+  - fqdn=1.5.1=pyhd8ed1ab_1
+  - h11=0.16.0=pyhd8ed1ab_0
+  - h2=4.3.0=pyhcf101f3_0
+  - hpack=4.1.0=pyhd8ed1ab_0
+  - httpcore=1.0.9=pyh29332c3_0
+  - httpx=0.28.1=pyhd8ed1ab_0
+  - hyperframe=6.1.0=pyhd8ed1ab_0
+  - idna=3.10=pyhd8ed1ab_1
+  - importlib-metadata=8.7.0=pyhe01879c_1
+  - ipykernel=6.30.1=pyh82676e8_0
+  - ipython=9.5.0=pyhfa0c392_0
+  - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
+  - ipywidgets=8.1.7=pyhd8ed1ab_0
+  - isoduration=20.11.0=pyhd8ed1ab_1
+  - jedi=0.19.2=pyhd8ed1ab_1
+  - jinja2=3.1.6=pyhd8ed1ab_0
+  - json5=0.12.1=pyhd8ed1ab_0
+  - jsonpointer=3.0.0=py312h7900ff3_2
+  - jsonschema=4.25.1=pyhe01879c_0
+  - jsonschema-with-format-nongpl=4.25.1=he01879c_0
+  - jupyter=1.1.1=pyhd8ed1ab_1
+  - jupyter-lsp=2.3.0=pyhcf101f3_0
+  - jupyter_client=8.6.3=pyhd8ed1ab_1
+  - jupyter_console=6.6.3=pyhd8ed1ab_1
+  - jupyter_core=5.8.1=pyh31011fe_0
+  - jupyter_events=0.12.0=pyh29332c3_0
+  - jupyter_server=2.17.0=pyhcf101f3_0
+  - jupyter_server_terminals=0.5.3=pyhd8ed1ab_1
+  - jupyterlab_pygments=0.3.0=pyhd8ed1ab_2
+  - jupyterlab_server=2.27.3=pyhd8ed1ab_1
+  - jupyterlab_widgets=3.0.15=pyhd8ed1ab_0
+  - keyutils=1.6.3=hb9d3cd8_0
+  - krb5=1.21.3=h659f571_0
+  - lark=1.2.2=pyhd8ed1ab_1
+  - ld_impl_linux-64=2.44=h1423503_1
+  - libedit=3.1.20250104=pl5321h7949ede_0
+  - libexpat=2.7.1=hecca717_0
+  - libffi=3.4.6=h2dba641_1
+  - libgcc=15.1.0=h767d61c_4
+  - libgcc-ng=15.1.0=h69a702a_4
+  - libgomp=15.1.0=h767d61c_4
+  - liblzma=5.8.1=hb9d3cd8_2
+  - libnsl=2.0.1=hb9d3cd8_1
+  - libsodium=1.0.20=h4ab18f5_0
+  - libsqlite=3.50.4=h0c1763c_0
+  - libstdcxx=15.1.0=h8f9b012_4
+  - libstdcxx-ng=15.1.0=h4852527_4
+  - libuuid=2.38.1=h0b41bf4_0
+  - libxcrypt=4.4.36=hd590300_1
+  - libzlib=1.3.1=hb9d3cd8_2
+  - markupsafe=3.0.2=py312h178313f_1
+  - matplotlib-inline=0.1.7=pyhd8ed1ab_1
+  - mistune=3.1.4=pyhcf101f3_0
+  - nbclient=0.10.2=pyhd8ed1ab_0
+  - nbconvert-core=7.16.6=pyh29332c3_0
+  - nbformat=5.10.4=pyhd8ed1ab_1
+  - ncurses=6.5=h2d0b736_3
+  - nest-asyncio=1.6.0=pyhd8ed1ab_1
+  - notebook=7.4.5=pyhd8ed1ab_0
+  - notebook-shim=0.2.4=pyhd8ed1ab_1
+  - openssl=3.5.3=h26f9b46_0
+  - overrides=7.7.0=pyhd8ed1ab_1
+  - packaging=25.0=pyh29332c3_1
+  - parso=0.8.5=pyhcf101f3_0
+  - pexpect=4.9.0=pyhd8ed1ab_1
+  - pickleshare=0.7.5=pyhd8ed1ab_1004
+  - pip=25.2=pyh8b19718_0
+  - platformdirs=4.4.0=pyhcf101f3_0
+  - prometheus_client=0.22.1=pyhd8ed1ab_0
+  - prompt-toolkit=3.0.52=pyha770c72_0
+  - prompt_toolkit=3.0.52=hd8ed1ab_0
+  - psutil=7.0.0=py312h4c3975b_1
+  - ptyprocess=0.7.0=pyhd8ed1ab_1
+  - pure_eval=0.2.3=pyhd8ed1ab_1
+  - pycparser=2.22=pyh29332c3_1
+  - pygments=2.19.2=pyhd8ed1ab_0
+  - pysocks=1.7.1=pyha55dd90_7
+  - python=3.12.11=h9e4cc4f_0_cpython
+  - python-dateutil=2.9.0.post0=pyhe01879c_2
+  - python-fastjsonschema=2.21.2=pyhe01879c_0
+  - python-gil=3.12.11=hd8ed1ab_0
+  - python_abi=3.12=8_cp312
+  - pytz=2025.2=pyhd8ed1ab_0
+  - pyyaml=6.0.2=py312h178313f_2
+  - pyzmq=27.1.0=py312hfb55c3c_0
+  - readline=8.2=h8c095d6_2
+  - referencing=0.36.2=pyh29332c3_0
+  - requests=2.32.5=pyhd8ed1ab_0
+  - rfc3339-validator=0.1.4=pyhd8ed1ab_1
+  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
+  - rfc3987-syntax=1.1.0=pyhe01879c_1
+  - send2trash=1.8.3=pyh0d859eb_1
+  - six=1.17.0=pyhe01879c_1
+  - sniffio=1.3.1=pyhd8ed1ab_1
+  - soupsieve=2.8=pyhd8ed1ab_0
+  - stack_data=0.6.3=pyhd8ed1ab_1
+  - terminado=0.18.1=pyh0d859eb_0
+  - tinycss2=1.4.0=pyhd8ed1ab_0
+  - tk=8.6.13=noxft_hd72426e_102
+  - tomli=2.2.1=pyhe01879c_2
+  - tornado=6.5.2=py312h4c3975b_1
+  - traitlets=5.14.3=pyhd8ed1ab_1
+  - types-python-dateutil=2.9.0.20250822=pyhd8ed1ab_0
+  - typing_extensions=4.15.0=pyhcf101f3_0
+  - typing_utils=0.1.0=pyhd8ed1ab_1
+  - uri-template=1.3.0=pyhd8ed1ab_1
+  - urllib3=2.5.0=pyhd8ed1ab_0
+  - wcwidth=0.2.13=pyhd8ed1ab_1
+  - webcolors=24.11.1=pyhd8ed1ab_0
+  - webencodings=0.5.1=pyhd8ed1ab_3
+  - websocket-client=1.8.0=pyhd8ed1ab_1
+  - wheel=0.45.1=pyhd8ed1ab_1
+  - widgetsnbextension=4.0.14=pyhd8ed1ab_0
+  - yaml=0.2.5=h280c20c_3
+  - zeromq=4.3.5=h387f397_9
+  - zipp=3.23.0=pyhd8ed1ab_0
+  - zstd=1.5.7=hb8e6e7a_2
+  - pip:
+      - absl-py==2.3.1
+      - accelerate==1.10.0
+      - aiohappyeyeballs==2.6.1
+      - aiohttp==3.12.15
+      - aiosignal==1.4.0
+      - annotated-types==0.7.0
+      - astor==0.8.1
+      - bertopic==0.17.3
+      - blake3==1.0.5
+      - cachetools==6.1.0
+      - cbor2==5.7.0
+      - chardet==5.2.0
+      - click==8.2.1
+      - cloudpickle==3.1.1
+      - colorama==0.4.6
+      - compressed-tensors==0.10.2
+      - contourpy==1.3.3
+      - cupy-cuda12x==13.6.0
+      - cycler==0.12.1
+      - dataproperty==1.1.0
+      - datasets==4.0.0
+      - depyf==0.19.0
+      - dill==0.3.8
+      - diskcache==5.6.3
+      - distro==1.9.0
+      - dnspython==2.7.0
+      - einops==0.8.1
+      - email-validator==2.2.0
+      - evaluate==0.4.5
+      - executing==2.2.0
+      - fastapi==0.116.1
+      - fastapi-cli==0.0.8
+      - fastapi-cloud-cli==0.1.5
+      - fastrlock==0.8.3
+      - filelock==3.19.1
+      - fonttools==4.60.0
+      - frozenlist==1.7.0
+      - fsspec==2025.3.0
+      - gguf==0.17.1
+      - hdbscan==0.8.40
+      - hf-xet==1.1.8
+      - httptools==0.6.4
+      - huggingface-hub==0.34.4
+      - interegular==0.3.3
+      - jiter==0.10.0
+      - joblib==1.5.1
+      - jsonlines==4.0.0
+      - jsonschema-specifications==2025.4.1
+      - jupyterlab==4.4.6
+      - kiwisolver==1.4.9
+      - llguidance==0.7.30
+      - llvmlite==0.44.0
+      - lm-eval==0.4.7
+      - lm-format-enforcer==0.10.12
+      - lxml==6.0.1
+      - markdown-it-py==4.0.0
+      - matplotlib==3.10.6
+      - mbstrdecoder==1.1.4
+      - mdurl==0.1.2
+      - mistral-common==1.8.4
+      - more-itertools==10.7.0
+      - mpmath==1.3.0
+      - msgpack==1.1.1
+      - msgspec==0.19.0
+      - multidict==6.6.4
+      - multiprocess==0.70.16
+      - narwhals==2.5.0
+      - networkx==3.5
+      - ninja==1.13.0
+      - nltk==3.9.1
+      - numba==0.61.2
+      - numexpr==2.11.0
+      - numpy==2.2.6
+      - nvidia-cublas-cu12==12.6.4.1
+      - nvidia-cuda-cupti-cu12==12.6.80
+      - nvidia-cuda-nvrtc-cu12==12.6.77
+      - nvidia-cuda-runtime-cu12==12.6.77
+      - nvidia-cudnn-cu12==9.5.1.17
+      - nvidia-cufft-cu12==11.3.0.4
+      - nvidia-cufile-cu12==1.11.1.6
+      - nvidia-curand-cu12==10.3.7.77
+      - nvidia-cusolver-cu12==11.7.1.2
+      - nvidia-cusparse-cu12==12.5.4.2
+      - nvidia-cusparselt-cu12==0.6.3
+      - nvidia-nccl-cu12==2.26.2
+      - nvidia-nvjitlink-cu12==12.6.85
+      - nvidia-nvtx-cu12==12.6.77
+      - openai==1.101.0
+      - openai-harmony==0.0.4
+      - opencv-python-headless==4.12.0.88
+      - outlines-core==0.2.10
+      - pandas==2.3.2
+      - pandocfilters==1.5.1
+      - partial-json-parser==0.2.1.1.post6
+      - pathvalidate==3.3.1
+      - peft==0.17.1
+      - pillow==11.3.0
+      - plotly==6.3.0
+      - portalocker==3.2.0
+      - prometheus-fastapi-instrumentator==7.1.0
+      - propcache==0.3.2
+      - protobuf==6.32.0
+      - py-cpuinfo==9.0.0
+      - pyarrow==21.0.0
+      - pybase64==1.4.2
+      - pybind11==3.0.0
+      - pycountry==24.6.1
+      - pydantic==2.11.7
+      - pydantic-core==2.33.2
+      - pydantic-extra-types==2.10.5
+      - pynndescent==0.5.13
+      - pyparsing==3.2.5
+      - pytablewriter==1.2.1
+      - python-dotenv==1.1.1
+      - python-json-logger==3.3.0
+      - python-multipart==0.0.20
+      - ray==2.48.0
+      - regex==2025.7.34
+      - rich==14.1.0
+      - rich-toolkit==0.15.0
+      - rignore==0.6.4
+      - rouge-score==0.1.2
+      - rpds-py==0.27.0
+      - sacrebleu==2.5.1
+      - safetensors==0.6.2
+      - scikit-learn==1.7.1
+      - scikit-multilearn==0.2.0
+      - scipy==1.16.1
+      - sentence-transformers==5.1.1
+      - sentencepiece==0.2.1
+      - sentry-sdk==2.35.0
+      - setproctitle==1.3.6
+      - setuptools==79.0.1
+      - shellingham==1.5.4
+      - soundfile==0.13.1
+      - soxr==0.5.0.post1
+      - sqlitedict==2.1.0
+      - starlette==0.47.2
+      - sympy==1.14.0
+      - tabledata==1.3.4
+      - tabulate==0.9.0
+      - tcolorpy==0.1.7
+      - threadpoolctl==3.6.0
+      - tiktoken==0.11.0
+      - tokenizers==0.21.4
+      - torch==2.7.1
+      - torchaudio==2.7.1
+      - torchvision==0.22.1
+      - tqdm==4.67.1
+      - tqdm-multiprocess==0.0.11
+      - transformers==4.55.4
+      - triton==3.3.1
+      - typepy==1.3.4
+      - typer==0.16.1
+      - typing-extensions==4.14.1
+      - typing-inspection==0.4.1
+      - tzdata==2025.2
+      - umap-learn==0.5.9.post2
+      - uvicorn==0.35.0
+      - uvloop==0.21.0
+      - vllm==0.10.1.1
+      - watchfiles==1.1.0
+      - websockets==15.0.1
+      - word2number==1.1
+      - xformers==0.0.31
+      - xgrammar==0.1.21
+      - xxhash==3.5.0
+      - yarl==1.20.1
+      - zstandard==0.24.0
+prefix: /home/lm2445/.conda/envs/finben