import os import json from pathlib import Path from typing import Dict, List, Set, Tuple import cv2 import numpy as np import pandas as pd import torch from tqdm import tqdm from matplotlib import pyplot as plt from PIL import Image from inference.frame_selection.frame_selection import uniformly_selected_frames from util.metrics import batched_f_measure, batched_jaccard from p_tqdm import p_umap # from inference.frame_selection.frame_selection import KNOWN_ANNOTATION_PREDICTORS from inference.run_on_video import predict_annotation_candidates, run_on_video # ---------------BEGIN Inference and visualization utils -------------------------- def make_non_uniform_grid(rows_of_image_paths: List[List[str]], output_path: str, grid_size=3, resize_to: Tuple[int, int]=(854, 480)): assert len(rows_of_image_paths) == grid_size for row in rows_of_image_paths: assert len(row) <= grid_size p_out_dir = Path(output_path) if not p_out_dir.exists(): p_out_dir.mkdir(parents=True) num_frames = None for row in rows_of_image_paths: for img_path_dir in row: num_frames_in_dir = len(os.listdir(img_path_dir)) if num_frames is None: num_frames = num_frames_in_dir else: assert num_frames == num_frames_in_dir rows_of_iterators = [] for row_of_image_dir_paths in rows_of_image_paths: row = [] for image_dir_path in row_of_image_dir_paths: p = Path(image_dir_path) iterator = iter(sorted(p.iterdir())) row.append(iterator) rows_of_iterators.append(row) for i in tqdm(range(num_frames)): rows_of_frames = [] for row in rows_of_iterators: frames = [] global_h, global_w = None, None for iterator in row: frame_path = str(next(iterator)) frame = cv2.imread(frame_path) h, w = frame.shape[0:2] if resize_to is not None: desired_w, desired_h = resize_to if h != desired_w or w != desired_w: frame = cv2.resize(frame, (desired_w, desired_h)) h, w = frame.shape[0:2] frames.append(frame) if global_h is None: global_h, global_w = h, w wide_frame = np.concatenate(frames, axis=1) if len(frames) < grid_size: pad_size = global_w * (grid_size - len(frames)) // 2 # center the frame wide_frame = np.pad(wide_frame, [(0, 0), (pad_size, pad_size), (0, 0)], mode='constant', constant_values=0) rows_of_frames.append(wide_frame) big_frame = np.concatenate(rows_of_frames, axis=0) cv2.imwrite(str(p_out_dir / f'frame_{i:06d}.png'), big_frame) def visualize_grid(video_names: List[str], labeled=True): for video_name in video_names: p_in_general = Path( f'/home/maksym/RESEARCH/VIDEOS/RESULTS/XMem_memory/permanent_work_memory/AL_comparison/{video_name}/Overlay') if labeled: p_in_general /= 'Labeled' cycle = p_in_general / 'INTERNAL_CYCLE_CONSISTENCY' ddiff = p_in_general / 'INTERNAL_DOUBLE_DIFF' umap = p_in_general / 'UMAP_EUCLIDEAN' pca_euclidean = p_in_general / 'PCA_EUCLIDEAN' pca_cosine = p_in_general / 'PCA_COSINE' one_frame_only = p_in_general / 'ONLY_ONE_FRAME' baseline_uniform = p_in_general / 'BASELINE_UNIFORM' baseline_human = p_in_general / 'HUMAN_CHOSEN' ULTIMATE = p_in_general / 'ULTIMATE_AUTO' grid = [ [cycle, ddiff, umap], [pca_euclidean, pca_cosine, baseline_uniform], [baseline_human, one_frame_only, ULTIMATE] ] if labeled: p_out = p_in_general.parent.parent / 'All_combined' else: p_out = p_in_general.parent / 'All_combined_unlabeled' make_non_uniform_grid(grid, p_out, grid_size=3) def get_videos_info(): return { 'long_scene': { 'num_annotation_candidates': 3, # 3, 'video_frames_path': '/home/maksym/RESEARCH/VIDEOS/long_scene/JPEGImages', 'video_masks_path': '/home/maksym/RESEARCH/VIDEOS/long_scene/Annotations', 'masks_out_path': '/home/maksym/RESEARCH/VIDEOS/RESULTS/XMem_memory/permanent_work_memory/AL_comparison/long_scene' }, 'long_scene_scale': { 'num_annotation_candidates': 3, # 3, 'video_frames_path': '/home/maksym/RESEARCH/VIDEOS/long_scene_scale/JPEGImages', 'video_masks_path': '/home/maksym/RESEARCH/VIDEOS/long_scene_scale/Annotations', 'masks_out_path': '/home/maksym/RESEARCH/VIDEOS/RESULTS/XMem_memory/permanent_work_memory/AL_comparison/long_scene_scale' }, 'ariana_smile': { 'num_annotation_candidates': 3, # 3, 'video_frames_path': '/home/maksym/RESEARCH/VIDEOS/Scenes_ariana_fixed_naming/smile/JPEGImages', 'video_masks_path': '/home/maksym/RESEARCH/VIDEOS/Scenes_ariana_fixed_naming/smile/Annotations/Lips', 'masks_out_path': '/home/maksym/RESEARCH/VIDEOS/RESULTS/XMem_memory/permanent_work_memory/AL_comparison/ariana_smile' }, 'ariana_blog': { 'num_annotation_candidates': 5, # 5, 'video_frames_path': '/home/maksym/RESEARCH/VIDEOS/Scenes_ariana_fixed_naming/blog/JPEGImages', 'video_masks_path': '/home/maksym/RESEARCH/VIDEOS/Scenes_ariana_fixed_naming/blog/Annotations/Together', 'masks_out_path': '/home/maksym/RESEARCH/VIDEOS/RESULTS/XMem_memory/permanent_work_memory/AL_comparison/ariana_blog' }, } def run_multiple_frame_selectors(videos_info: Dict[str, Dict], csv_output_path: str, predictors: Dict[str, callable] = None, load_existing_masks=False): output = pd.DataFrame(columns=list(predictors)) p_bar = tqdm(total=len(videos_info) * len(predictors)) exceptions = pd.DataFrame(columns=['video', 'method', 'error_message']) for video_name, info in videos_info.items(): video_frames_path = info['video_frames_path'] num_candidate_frames = info['num_annotation_candidates'] if load_existing_masks: masks_first_frame_only = Path(info['masks_out_path']) / 'ONLY_ONE_FRAME' else: masks_first_frame_only = None results = {} for method_name, method_func in predictors.items(): try: chosen_annotation_frames = predict_annotation_candidates( video_frames_path, num_candidates=num_candidate_frames, candidate_selection_function=method_func, masks_first_frame_only=masks_first_frame_only, masks_in_path=info['video_masks_path'], masks_out_path=Path(info['masks_out_path']) / 'FIRST_FRAME_ONLY' / 'masks', # used by some target-aware algorithms print_progress=False ) except Exception as e: print(f"[!!!] ERROR ({video_name},{method_name})={e}") print("Resulting to uniform baseline") chosen_annotation_frames = predict_annotation_candidates( video_frames_path, num_candidates=num_candidate_frames, candidate_selection_function=KNOWN_ANNOTATION_PREDICTORS['UNIFORM'], masks_in_path=info['video_masks_path'], print_progress=False ) exceptions.append([video_name, method_name, str(e)]) torch.cuda.empty_cache() results[method_name] = json.dumps(chosen_annotation_frames) p_bar.update() output.loc[video_name] = results # save updated after every video output.index.name = 'video_name' output.to_csv(csv_output_path) if min(exceptions.shape) > 0: exceptions.to_csv('output/exceptions.csv') def run_inference_with_pre_chosen_frames(chosen_frames_csv_path: str, videos_info: Dict[str, Dict], output_path: str, only_methods_subset: Set[str] = None, compute_iou=False, IoU_results_save_path=None, **kwargs): df = pd.read_csv(chosen_frames_csv_path, index_col='video_name') if only_methods_subset is not None: num_runs = df.shape[0] * len(only_methods_subset) else: num_runs = np.prod(df.shape) if compute_iou: assert IoU_results_save_path is not None p_iou_dir = Path(IoU_results_save_path) i = 0 p_bar = tqdm(desc='Running inference comparing multiple different AL approaches', total=num_runs) for video_name, info in videos_info.items(): video_row = df.loc[video_name] # ious = {} for method in video_row.index: if only_methods_subset is not None and method not in only_methods_subset: continue chosen_frames_str = video_row.loc[method] chosen_frames = json.loads(chosen_frames_str) video_frames_path = info['video_frames_path'] video_masks_path = info['video_masks_path'] output_masks_path = Path(output_path) / video_name / method stats = run_on_video(video_frames_path, video_masks_path, output_masks_path, frames_with_masks=chosen_frames, compute_iou=compute_iou, print_progress=False, **kwargs) if compute_iou: p_out_curr_video_method = p_iou_dir / video_name if not p_out_curr_video_method.exists(): p_out_curr_video_method.mkdir(parents=True) stats.to_csv(p_out_curr_video_method / f'{method}.csv')#f'output/AL_comparison_all_methods/{video_name}_{method}.csv') # print(f"Video={video_name},method={method},IoU={stats['iou'].mean():.4f}") # ious[f'{video_name}_{method}'] = [float(iou) for iou in stats['iou']] p_bar.update() i += 1 # with open(f'output/AL_comparison_all_methods/ious_{video_name}_all_methods.json', 'wt') as f_out: # json.dump(ious, f_out) def run_inference_with_uniform_frames(videos_info: Dict[str, Dict], output_path: str, **kwargs): num_runs = len(videos_info) i = 0 p_bar = tqdm(desc='Running inference comparing multiple different AL approaches', total=num_runs) for video_name, info in videos_info.items(): frames = os.listdir(info['video_frames_path']) chosen_frames = uniformly_selected_frames(frames, how_many_frames=info['num_annotation_candidates']) video_frames_path = info['video_frames_path'] video_masks_path = info['video_masks_path'] output_masks_path = Path(output_path) / video_name try: stats = run_on_video(video_frames_path, video_masks_path, output_masks_path, frames_with_masks=chosen_frames, compute_iou=False, print_progress=False, **kwargs) except ValueError as e: print(f"[!!!] {e}") p_bar.update() i += 1 def visualize_chosen_frames(video_name: str, num_total_frames: int, data: pd.Series, output_path: str): def _sort_index(series): ll = list(series.index) sorted_ll = sorted(ll, key=lambda x: str( min(json.loads(series.loc[x])))) return sorted_ll sorted_index = _sort_index(data) plt.figure(figsize=(16, 10)) plt.title(f"Chosen frames for {video_name}") plt.xlim(-10, num_total_frames + 10) num_methods = len(data.index) plt.ylim(-0.25, num_methods + 0.25) plt.xlabel('Frame number') plt.ylabel('AL method') plt.yticks([]) # disable yticks previous_plots = [] for i, method_name in enumerate(sorted_index): chosen_frames = json.loads(data.loc[method_name]) num_frames = len(chosen_frames) x = sorted(chosen_frames) y = [i for _ in chosen_frames] plt.axhline(y=i, zorder=1, xmin=0.01, xmax=0.99) plt.scatter(x=x, y=y, label=method_name, s=256, zorder=3, marker="v") if len(previous_plots) != 0: for i in range(num_frames): curr_x, curr_y = x[i], y[i] prev_x, prev_y = previous_plots[-1][0][i], previous_plots[-1][1][i] plt.plot([prev_x, curr_x], [prev_y, curr_y], linewidth=1, color='gray', alpha=0.5) previous_plots.append((x, y)) # texts = map(str, range(num_frames)) # for i, txt in enumerate(texts): # plt.annotate(txt, (x[i] + 2, y[i] + 0.1), zorder=4, fontproperties={'weight': 'bold'}) plt.legend() p_out = Path(f'{output_path}/chosen_frames_{video_name}.png') if not p_out.parent.exists(): p_out.parent.mkdir(parents=True) plt.savefig(p_out, bbox_inches='tight') # -------------------------END Inference and visualization utils -------------------------- # ------------------------BEGIN metrics --------------------------------------------------- def _load_gt(p): return np.stack([np.array(Image.open(p_gt).convert('P')) for p_gt in sorted(p.iterdir())]) def _load_preds(p, palette: Image.Image, size: tuple): return np.stack([Image.open(p_gt).convert('RGB').resize(size, resample=Image.Resampling.NEAREST).quantize(palette=palette, dither=Image.Dither.NONE) for p_gt in sorted(p.iterdir())]) def compute_metrics_al(p_source_masks, p_preds, looped=True): def _proc(p_video: Path): video_name = p_video.name p_gts = p_source_masks / p_video.name first_mask = Image.open(next(p_gts.iterdir())).convert('P') w, h = first_mask.size gts = _load_gt(p_gts) stats = { 'video_name': video_name } for p_method in p_video.iterdir(): if not p_method.is_dir(): continue method_name = p_method.name p_masks = p_method / 'masks' preds = _load_preds(p_masks, palette=first_mask, size=(w, h)) assert preds.shape == gts.shape iou = batched_jaccard(gts, preds) avg_iou = iou.mean(axis=0) f_score = batched_f_measure(gts, preds) avg_f_score = f_score.mean(axis=0) stats[f'{method_name}-iou'] = float(avg_iou) stats[f'{method_name}-f'] = float(avg_f_score) if looped: n = iou.shape[0] between = int(0.9 * n) first_part_iou = iou[:between].mean() second_part_iou = iou[between:].mean() first_part_f_score = f_score[:between].mean() second_part_f_score = f_score[between:].mean() stats[f'{method_name}-iou-90'] = float(first_part_iou) stats[f'{method_name}-iou-10'] = float(second_part_iou) stats[f'{method_name}-f-90'] = float(first_part_f_score) stats[f'{method_name}-f-10'] = float(second_part_f_score) return stats list_of_stats = p_umap(_proc, list(p_preds.iterdir()), num_cpus=3) results = pd.DataFrame.from_records(list_of_stats).dropna(axis='columns').set_index('video_name') return results def compute_metrics(p_source_masks, p_preds, pred_to_annot_names_lookup=None): list_of_stats = [] # for p_pred_video in list(p_preds.iterdir()): def _proc(p_pred_video: Path): video_name = p_pred_video.name if pred_to_annot_names_lookup is not None: video_name = pred_to_annot_names_lookup[video_name] # if 'XMem' in str(p_pred_video): p_pred_video = Path(p_pred_video) / 'masks' p_gts = p_source_masks / video_name first_mask = Image.open(next(p_gts.iterdir())).convert('P') w, h = first_mask.size gts = _load_gt(p_gts) preds = _load_preds(p_pred_video, palette=first_mask, size=(w, h)) assert preds.shape == gts.shape avg_iou = batched_jaccard(gts, preds).mean(axis=0) avg_f_score = batched_f_measure(gts, preds).mean(axis=0) stats = { 'video_name': video_name, 'iou': float(avg_iou), 'f': float(avg_f_score), } return stats # list_of_stats.append(stats) # p_source_masks = Path('/home/maksym/RESEARCH/Datasets/MOSE/train/Annotations') # p_preds = Path('/home/maksym/RESEARCH/VIDEOS/RESULTS/XMem_memory/MOSE/AL_comparison') list_of_stats = p_umap(_proc, sorted(p_preds.iterdir(), key=lambda x: len(os.listdir(x)), reverse=True), num_cpus=4) results = pd.DataFrame.from_records(list_of_stats).dropna(axis='columns').set_index('video_name') return results # -------------------------END metrics ------------------------------------------------------ def get_dataset_video_info(p_imgs_general, p_annotations_general, p_out_general, num_annotation_candidates=5): videos_info = {} for p_video in sorted(p_imgs_general.iterdir(), key=lambda x: len(os.listdir(x)), reverse=True): # longest video first to avoid OOM in the future video_name = p_video.name p_masks = p_annotations_general / video_name videos_info[video_name] = dict( num_annotation_candidates=num_annotation_candidates, video_frames_path=p_video, video_masks_path=p_masks, masks_out_path=p_out_general / video_name ) return videos_info if __name__ == "__main__": pass # ## Usage examples # ## Run from root-level directory, e.g. in `main.py` # ## Running multiple frame selectors, saving their predicted frame numbers to a .csv file # run_multiple_frame_selectors(get_videos_info(), csv_output_path='output/al_videos_chosen_frames.csv') # ## Running and visualizing inference based on pre-calculated frames selected # run_inference_with_pre_chosen_frames( # chosen_frames_csv_path='output/al_videos_chosen_frames.csv', # videos_info=get_videos_info(), # output_path='/home/maksym/RESEARCH/VIDEOS/RESULTS/XMem_memory/permanent_work_memory/AL_comparison/' # ) # ## Concatenating multiple video results into a non-uniform grid # visualize_grid( # names=['long_scene', 'ariana_blog', 'ariana_smile', 'long_scene_scale'], # labeled=True, # )