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PACMT

Text Classification
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metagenomics
viral-identification
hierarchical-classification
taxonomic-classification
DNABERT-2
bioinformatics
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  1. hierarchy_model/head_config.json +6 -0
  2. hierarchy_model/label_sizes.json +6 -0
  3. hierarchy_model/label_taxonomy_mapping.csv +0 -0
  4. hierarchy_model/pytorch_model.bin +3 -0
  5. hierarchy_model/special_tokens_map.json +7 -0
  6. hierarchy_model/taxonomy_paths.csv +0 -0
  7. hierarchy_model/taxonomy_paths_with_names.csv +0 -0
  8. hierarchy_model/tokenizer.json +0 -0
  9. hierarchy_model/tokenizer_config.json +11 -0
hierarchy_model/head_config.json ADDED
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+ {
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+ "num_order": 84,
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+ "num_family": 222,
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+ "num_genus": 1651,
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+ "num_species": 7566
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+ }
hierarchy_model/label_sizes.json ADDED
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+ {
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+ "family": 222,
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+ "genus": 1651,
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+ "order": 84,
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+ "species": 7566
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+ }
hierarchy_model/label_taxonomy_mapping.csv ADDED
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hierarchy_model/pytorch_model.bin ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ size 497628501
hierarchy_model/special_tokens_map.json ADDED
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+ {
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+ "cls_token": "[CLS]",
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+ "mask_token": "[MASK]",
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+ "pad_token": "[PAD]",
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+ "sep_token": "[SEP]",
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+ "unk_token": "[UNK]"
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+ }
hierarchy_model/taxonomy_paths.csv ADDED
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hierarchy_model/taxonomy_paths_with_names.csv ADDED
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hierarchy_model/tokenizer.json ADDED
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hierarchy_model/tokenizer_config.json ADDED
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+ {
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+ "clean_up_tokenization_spaces": true,
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+ "cls_token": "[CLS]",
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+ "mask_token": "[MASK]",
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+ "model_max_length": 512,
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+ "pad_token": "[PAD]",
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+ "padding_side": "right",
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+ "sep_token": "[SEP]",
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+ "tokenizer_class": "PreTrainedTokenizerFast",
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+ "unk_token": "[UNK]"
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+ }