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README.md
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# SAM3 Blood Vessel Segmentation
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Fine-tuned SAM3 model for blood vessel angiography segmentation.
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## Model Performance
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| Model | Dice | IoU | Recall |
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|-------|------|-----|--------|
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| Original SAM3 | 0.00 | 0.00 | 0.00 |
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| Baseline (5 epochs) | 0.79 | 0.66 | 0.73 |
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| **Dice Optimized (10 epochs)** | **0.82** | **0.69** | **0.77** |
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| Dice Optimized + Post-processing | **0.83** | **0.70** | **0.78** |
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## Files
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- `checkpoint_dice_optimized.pt` - **Recommended** - Dice optimized model
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- `checkpoint_baseline.pt` - Baseline fine-tuned model
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- `sam3_original.pt` - Original SAM3 weights
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## Usage
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```python
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from huggingface_hub import hf_hub_download
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import torch
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from sam3.model_builder import build_sam3_image_model
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from sam3.model.sam3_image_processor import Sam3Processor
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# Download weights
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checkpoint = hf_hub_download(
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repo_id="qimingfan10/sam3-vessel-segmentation",
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filename="checkpoint_dice_optimized.pt"
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)
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# Load model
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model = build_sam3_image_model(
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checkpoint_path="path/to/sam3_original.pt",
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enable_segmentation=True,
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device="cuda"
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)
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# Load fine-tuned weights
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ckpt = torch.load(checkpoint, map_location="cuda")
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state_dict = {k.replace('module.', ''): v for k, v in ckpt['model'].items()}
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model.load_state_dict(state_dict, strict=False)
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model.eval()
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# Inference
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processor = Sam3Processor(model)
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state = processor.set_image(image)
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output = processor.set_text_prompt(state=state, prompt="blood vessel")
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masks = output["masks"]
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```
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## Training
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See [VESSEL_SEGMENTATION_GUIDE.md](https://github.com/qimingfan10/Sam3/blob/main/VESSEL_SEGMENTATION_GUIDE.md) for training details.
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## Citation
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Please cite SAM3 if you use this model.
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