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b233cf7 884ed70 b233cf7 31ee18f b233cf7 31ee18f b233cf7 31ee18f b233cf7 31ee18f b233cf7 31ee18f b233cf7 884ed70 b233cf7 31ee18f b233cf7 884ed70 b233cf7 31ee18f b233cf7 31ee18f b233cf7 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 | from __future__ import annotations
import argparse
import json
import logging
import signal
import threading
import uuid
from concurrent.futures import FIRST_COMPLETED, ThreadPoolExecutor, wait
from pathlib import Path
from typing import Any
import numpy as np
from pino.draft_engine import FormulaGenerator
from pino.verifier import FragrancePipelineVerifier
logger = logging.getLogger("pino.dataset_builder")
GENRES = ["citrus_cologne", "fougere", "floral_woody", "amber_oriental", "wildcard"]
# Worker-thread local storage for generator and verifier reuse.
_worker_local = threading.local()
def _get_worker_generator(
genre: str,
rules_path: Path,
registry_path: Path,
literature_path: Path,
base_seed: int,
) -> FormulaGenerator:
"""Return a thread-local FormulaGenerator for this genre."""
current_genre = getattr(_worker_local, "genre", None)
if current_genre != genre or not hasattr(_worker_local, "generator"):
thread_id = threading.current_thread().ident or 0
_worker_local.generator = FormulaGenerator(
genre=genre,
rules_path=rules_path,
registry_path=registry_path,
literature_path=literature_path,
seed=base_seed + hash(genre) + thread_id,
min_k=5,
max_k=20,
)
_worker_local.genre = genre
return _worker_local.generator
def _get_worker_verifier() -> FragrancePipelineVerifier:
"""Return a thread-local FragrancePipelineVerifier."""
if not hasattr(_worker_local, "verifier"):
_worker_local.verifier = FragrancePipelineVerifier()
return _worker_local.verifier
class DatasetBuilder:
"""
Streaming, multi-threaded dataset builder for PINO synthetic trajectories.
Runs one stratified sweep per genre, writes verified records append-only to
a JSON-Lines file, and emits a final analytics card.
"""
def __init__(
self,
output_path: str | Path,
rules_path: str | Path,
registry_path: str | Path,
literature_path: str | Path,
per_genre: int = 1000,
max_workers: int = 16,
seed: int = 2026,
) -> None:
self.output_path = Path(output_path)
self.output_path.parent.mkdir(parents=True, exist_ok=True)
self.rules_path = Path(rules_path)
self.registry_path = Path(registry_path)
self.literature_path = Path(literature_path)
self.per_genre = per_genre
self.max_workers = max_workers
self.seed = seed
self._shutdown = False
def _signal_handler(self, signum: int, frame: Any) -> None:
logger.warning("Shutdown signal received; finishing in-flight work ...")
self._shutdown = True
def _task(self, idx: int, genre: str) -> dict[str, Any] | None:
"""Generate and verify a single formula in a worker thread."""
generator = _get_worker_generator(
genre, self.rules_path, self.registry_path, self.literature_path, self.seed
)
formula, formula_id = generator.generate(idx=idx)
if not generator.light_ifra_check(formula)["passed"]:
return None
try:
verifier = _get_worker_verifier()
result = verifier.run_sim(formula, duration_seconds=28800, interval_seconds=600)
except Exception as exc:
logger.debug("Verifier rejected %s: %s", formula_id, exc)
return None
if result.get("status") not in ("passed", "depleted"):
return None
# Build OAV-weighted descriptor targets using the new semantics module.
from pino import semantics
composition = [
{"cas": c.get("cas"), "smiles": c.get("smiles")}
for c in formula
]
C_gas = np.array([step["C_gas_mg_m3"] for step in result["trajectory"]])
# Align concentration matrix by canonical CAS ordering.
cas_order = [c["cas"] for c in composition]
concentrations = np.zeros((C_gas.shape[0], len(cas_order)), dtype=np.float32)
for t_idx, step in enumerate(result["trajectory"]):
for c_idx, cas in enumerate(cas_order):
concentrations[t_idx, c_idx] = step["C_gas_mg_m3"].get(cas, 0.0)
objective_targets = semantics.compute_oav_targets(composition, concentrations)
psychometric_targets = semantics.get_psychometric_targets(genre)
return {
"status": result.get("status"),
"formula_id": formula_id,
"genre": genre,
"metadata": {
"generation_strategy": genre,
"active_components_count": len(formula) - 1, # exclude solvent
"formula_id": formula_id,
},
"formula": formula,
"depletion_rates": result.get("depletion_rates", {}),
"trajectory": result.get("trajectory", []),
"objective_targets": objective_targets.tolist(),
"psychometric_targets": psychometric_targets.tolist(),
}
def _append_record(self, record: dict[str, Any]) -> None:
with self.output_path.open("a") as f:
f.write(json.dumps(record) + "\n")
def _count_existing(self, genre: str) -> int:
if not self.output_path.exists():
return 0
count = 0
with self.output_path.open("r") as f:
for line in f:
try:
rec = json.loads(line)
if rec.get("metadata", {}).get("generation_strategy") == genre:
count += 1
except Exception:
continue
return count
def _run_genre(self, genre: str, global_start_idx: int) -> dict[str, Any]:
"""Generate and verify `per_genre` records for a single genre."""
existing = self._count_existing(genre)
target = self.per_genre - existing
if target <= 0:
logger.info("Genre %s already has %d records; skipping", genre, existing)
return {"genre": genre, "verified": existing, "drafted": 0, "rejected": 0}
logger.info("Starting genre %s | need %d more records", genre, target)
verified = existing
drafted = 0
rejected = 0
next_idx = global_start_idx
with ThreadPoolExecutor(max_workers=self.max_workers, thread_name_prefix=f"pino-{genre}") as executor:
futures: set[Any] = set()
while verified < self.per_genre and not self._shutdown:
# Keep the worker pool saturated.
while len(futures) < self.max_workers * 4 and not self._shutdown:
futures.add(executor.submit(self._task, next_idx, genre))
next_idx += 1
drafted += 1
if drafted >= target * 5:
# Safety valve: stop drafting if rejection rate is too high.
break
if not futures:
break
done, futures = wait(futures, return_when=FIRST_COMPLETED)
for future in done:
result = future.result()
if result is None:
rejected += 1
continue
self._append_record(result)
verified += 1
if verified % 100 == 0 and verified > existing:
logger.info(
"Genre %s: verified %d/%d | drafted %d | rejected %d",
genre,
verified,
self.per_genre,
drafted,
rejected,
)
if verified >= self.per_genre:
break
# Safety valve: if rejection rate is high, move on anyway.
if drafted > max(100, verified * 3) and verified < self.per_genre:
logger.warning(
"Genre %s has high rejection rate (verified %d, drafted %d); continuing",
genre, verified, drafted
)
logger.info(
"Genre %s complete: verified %d/%d | drafted %d | rejected %d",
genre,
verified,
self.per_genre,
drafted,
rejected,
)
return {"genre": genre, "verified": verified, "drafted": drafted, "rejected": rejected}
def build(self) -> dict[str, Any]:
"""Run the full stratified sweep and return the analytics card."""
signal.signal(signal.SIGINT, self._signal_handler)
signal.signal(signal.SIGTERM, self._signal_handler)
# Wipe only if empty; otherwise resume.
if not self.output_path.exists() or self.output_path.stat().st_size == 0:
self.output_path.write_text("")
card = {"genres": [], "total_verified": 0, "total_drafted": 0, "total_rejected": 0}
global_idx = 0
for genre in GENRES:
summary = self._run_genre(genre, global_idx)
card["genres"].append(summary)
card["total_verified"] += summary["verified"]
card["total_drafted"] += summary["drafted"]
card["total_rejected"] += summary["rejected"]
global_idx += self.per_genre
logger.info(
"Dataset complete: %d verified | %d drafted | %d rejected",
card["total_verified"],
card["total_drafted"],
card["total_rejected"],
)
return card
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="Build PINO synthetic dataset v2")
parser.add_argument("--output", default="data/synthetic_dataset_v2.jsonl")
parser.add_argument("--rules", default="data/genre_rules.json")
parser.add_argument("--registry", default="src/pino/registry.db")
parser.add_argument("--literature", default="data/literature_formulas.json")
parser.add_argument("--per-genre", type=int, default=1000)
parser.add_argument("--workers", type=int, default=4)
parser.add_argument("--seed", type=int, default=2026)
parser.add_argument("--log-level", default="INFO")
args = parser.parse_args()
logging.basicConfig(
level=getattr(logging, args.log_level.upper()),
format="%(asctime)s %(levelname)s %(name)s: %(message)s",
)
builder = DatasetBuilder(
output_path=args.output,
rules_path=args.rules,
registry_path=args.registry,
literature_path=args.literature,
per_genre=args.per_genre,
max_workers=args.workers,
seed=args.seed,
)
card = builder.build()
print(json.dumps(card, indent=2))
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