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import json
import logging
import os
import random
import torch.multiprocessing as mp
from pathlib import Path
from typing import Any
import numpy as np
import torch
from datasets import load_dataset
from sentence_transformers import SentenceTransformer
from transformers import Trainer, TrainingArguments
from pino.pimt_model import FragranceTrajectoryDataset, DEFAULT_EMBEDDING_DIM
from pino.pimt_model_hf import PIMTConfig, PhysicsInformedMixtureTransformer
logger = logging.getLogger("pino.train_hf")
_TEXT_ENCODER: SentenceTransformer | None = None
def get_text_encoder() -> SentenceTransformer:
global _TEXT_ENCODER
if _TEXT_ENCODER is None:
_TEXT_ENCODER = SentenceTransformer("sentence-transformers/all-MiniLM-L6-v2")
return _TEXT_ENCODER
def seed_everything(seed: int = 42) -> None:
"""Lock all RNGs for fully reproducible training runs."""
random.seed(seed)
os.environ["PYTHONHASHSEED"] = str(seed)
np.random.seed(seed)
torch.manual_seed(seed)
torch.cuda.manual_seed(seed)
torch.backends.cudnn.deterministic = True
def pad_trajectory_collate(batch: list) -> dict:
"""Custom collate for variable-length ingredient formulations with text conditioning."""
max_molecules = max(item["tokens"].size(0) for item in batch)
max_timesteps = max(item["physics"].size(0) for item in batch)
bsz = len(batch)
tokens = torch.zeros(bsz, max_molecules, DEFAULT_EMBEDDING_DIM, dtype=torch.float32)
physics = torch.zeros(bsz, max_timesteps, max_molecules, 2, dtype=torch.float32)
src_key_padding_mask = torch.ones(bsz, max_molecules, dtype=torch.bool)
labels_obj = torch.zeros(bsz, max_timesteps, 138, dtype=torch.float32)
labels_sub = torch.zeros(bsz, 7, dtype=torch.float32)
genre_labels = torch.zeros(bsz, dtype=torch.int64)
# Encode text on-the-fly using sentence-transformers only if a record is missing
# its pre-computed embedding. This avoids loading the encoder inside forked
# dataloader workers (which can fail on CUDA re-init).
text_encoder = None
text_embeddings = torch.zeros(bsz, 384, dtype=torch.float32)
for i, item in enumerate(batch):
n_mol = item["tokens"].size(0)
t_steps = item["physics"].size(0)
tokens[i, :n_mol] = item["tokens"]
physics[i, :t_steps, :n_mol] = item["physics"]
src_key_padding_mask[i, :n_mol] = False
labels_obj[i, :t_steps] = item["target_obj"]
labels_sub[i] = item["target_sub"]
if "text_embedding" in item:
text_embeddings[i] = item["text_embedding"].clone().detach().float() if torch.is_tensor(item["text_embedding"]) else torch.tensor(item["text_embedding"], dtype=torch.float32)
elif "text_conditioning" in item:
if text_encoder is None:
text_encoder = get_text_encoder()
emb = text_encoder.encode(item["text_conditioning"], convert_to_numpy=True)
text_embeddings[i] = torch.from_numpy(emb).float()
# Fuse objective and subjective labels into a single (B, T, 151) tensor for HF Trainer (legacy shape).
labels_sub_t = labels_sub.unsqueeze(1).expand(-1, max_timesteps, -1)
labels = torch.cat([labels_obj, labels_sub_t], dim=-1)
return {
"tokens": tokens,
"physics": physics,
"src_key_padding_mask": src_key_padding_mask,
"text_embedding": text_embeddings,
"labels": labels,
}
def compute_metrics(eval_pred) -> dict[str, float]:
"""
Compute isolated objective and subjective metrics from eval predictions.
"""
predictions, labels = eval_pred
obj_pred = predictions[:, :, :138]
obj_true = labels[:, :, :138]
sub_pred = predictions[:, 0, 138:]
sub_true = labels[:, 0, 138:]
obj_mse = float(np.mean((obj_pred - obj_true) ** 2))
sub_mae = float(np.mean(np.abs(sub_pred - sub_true)))
return {
"objective_mse": round(obj_mse, 6),
"subjective_mae": round(sub_mae, 6),
"eval_loss": round(obj_mse + 0.5 * sub_mae, 6),
}
def export_publication_metrics(
trainer: Trainer,
val_ds: FragranceTrajectoryDataset,
output_path: str = "data/publication_metrics.json",
) -> None:
"""Run evaluation on the validation set and save raw prediction/target pairs."""
logger.info("Exporting publication validation metrics to %s", output_path)
predictions = trainer.predict(val_ds)
pred_arr = predictions.predictions
true_arr = predictions.label_ids
obj_pred = pred_arr[:, :, :138]
obj_true = true_arr[:, :, :138]
sub_pred = pred_arr[:, 0, 138:]
sub_true = true_arr[:, 0, 138:]
# Save a subset (first 200 records) for graphing predicted-vs-actual.
subset_size = min(200, obj_pred.shape[0])
metrics = {
"objective": {
"predictions": obj_pred[:subset_size].tolist(),
"targets": obj_true[:subset_size].tolist(),
"mse": float(np.mean((obj_pred - obj_true) ** 2)),
},
"subjective": {
"predictions": sub_pred[:subset_size].tolist(),
"targets": sub_true[:subset_size].tolist(),
"mae": float(np.mean(np.abs(sub_pred - sub_true))),
},
}
Path(output_path).parent.mkdir(parents=True, exist_ok=True)
Path(output_path).write_text(json.dumps(metrics, indent=2))
logger.info("Publication metrics saved")
def run_training() -> None:
"""Entry point used by the Hugging Face training Space."""
main()
def main() -> None:
# Use spawn for dataloader workers so CUDA is safe with multiprocessing.
try:
mp.set_start_method("spawn", force=True)
except Exception:
pass
logging.basicConfig(
level=logging.INFO,
format="%(asctime)s %(levelname)s %(name)s: %(message)s",
)
logger.info("Training PIMT with Hugging Face transformers")
seed = 42
seed_everything(seed)
# Load the verified stratified partitions from the Hugging Face Hub.
logger.info("Loading PINO synthetic dataset from Hugging Face Hub")
hub_dataset = load_dataset("mattbitzesty/pino-synthetic-dataset")
train_records = list(hub_dataset["train"])
val_records = list(hub_dataset["validation"])
train_ds = FragranceTrajectoryDataset(records=train_records, use_embedding_fallback=True)
val_ds = FragranceTrajectoryDataset(records=val_records, use_embedding_fallback=True)
config = PIMTConfig(
embedding_dim=DEFAULT_EMBEDDING_DIM,
objective_dim=138,
state_dim=2,
hidden_dim=256,
num_heads=8,
num_layers=4,
num_classes_sub=7,
)
model = PhysicsInformedMixtureTransformer(config)
training_args = TrainingArguments(
output_dir="./models/pino_publication_run",
do_train=True,
do_eval=True,
evaluation_strategy="epoch",
num_train_epochs=5,
per_device_train_batch_size=32,
per_device_eval_batch_size=32,
fp16=True,
gradient_accumulation_steps=4,
dataloader_num_workers=2,
dataloader_pin_memory=True,
logging_steps=10,
logging_dir="./logs/tensorboard",
logging_strategy="steps",
report_to=["tensorboard"],
save_strategy="epoch",
save_total_limit=2,
load_best_model_at_end=True,
metric_for_best_model="eval_loss",
greater_is_better=False,
disable_tqdm=False,
seed=seed,
remove_unused_columns=False,
push_to_hub=True,
hub_model_id="mattbitzesty/pino-pimt",
hub_strategy="end",
)
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_ds,
eval_dataset=val_ds,
data_collator=pad_trajectory_collate,
compute_metrics=compute_metrics,
)
trainer.train()
export_publication_metrics(trainer, val_ds)
logger.info("HF training complete")
if __name__ == "__main__":
main()
|