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README.md
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[](https://arxiv.org/abs/2510.13768)
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[](https://creativecommons.org/licenses/by-nc/4.0/deed.en)
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CortexMAE is an fMRI foundation model trained on 2.1K hours of fMRI data from the [Human Connectome Project](https://www.humanconnectome.org/study/hcp-young-adult/overview) using
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- **CortexMAE-P**: a computationally efficient model based on the Schaefer-400 parcellation.
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- **CortexMAE-F**: our flagship model based on fMRI flat maps.
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- **CortexMAE-V**: a dense volume model based on an efficient cortex-only representation.
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[](https://arxiv.org/abs/2510.13768)
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[](https://creativecommons.org/licenses/by-nc/4.0/deed.en)
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CortexMAE is an fMRI foundation model trained on 2.1K hours of fMRI data from the [Human Connectome Project](https://www.humanconnectome.org/study/hcp-young-adult/overview) using masked autoencoder. We release a family of models trained with different fMRI input representations:
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- **CortexMAE-P**: a computationally efficient model based on the Schaefer-400 parcellation.
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- **CortexMAE-F**: our flagship model based on fMRI flat maps.
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- **CortexMAE-V**: a dense volume model based on an efficient cortex-only representation.
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